Files
Submissions-App/TODO.md

2.7 KiB

  • Validate form data using pydantic.
  • Rebuild RSLNamer and fix circular imports
    • Should be used when coming in to parser and when leaving form. NO OTHER PLACES.
  • Change 'check_is_power_user' to decorator.
  • Drag and drop files into submission form area?
  • Get info for controls into their sample hitpicks.
  • Move submission-type specific parser functions into class methods in their respective models.
  • Improve function results reporting.
    • Maybe make it a list until it gets to the reporter?
  • Increase robustness of form parsers by adding custom procedures for each.
  • Rerun Kit integrity if extraction kit changed in the form.
  • Clean up db.functions.
  • Make kits easier to add.
  • Clean up & document code... again.
    • Including paring down the logging.debugs
    • Also including reducing number of functions in db.functions
  • Fix Tests... again.
  • Rebuild database
  • Provide more generic names for reagenttypes in kits and move specific names to reagents.
    • ex. Instead of "omega_e-z_96_disruptor_plate_c_plus" in reagent types, have "omega_plate" and have "omega_e-z_96_disruptor_plate_c_plus" in reagent name.
    • Maybe rename to "ReagentRoles"?
    • If I'm doing this, since the forms have a different layout for each submission type I should rewrite the parser to use the locations given in database... Which I should do anyway
  • Fix Wastewater/Artic double submission problem
  • Fix tests.
  • Reorganize wastewater artic parser.
  • Streamline addition of new kits by moving as much into DB as possible.
  • Large scale refactor (2023-07-24).
  • Make plate details from html, same as export.
  • Put in SN controls I guess.
  • Code clean-up and refactor (2023-07).
  • Migrate context settings to pydantic-settings model.
  • Insert column into reagent type to indicate if reagent is required for kit.
    • Needed to keep interchangeable bead plates from being forced into forms.
  • Migrate the parser.sub dictionary to pydantic models.
  • Move type_decider to metadata based method rather than excel map.
  • Solve bug for plate mapping when two samples of same name are in different rows.
    • Try importing "L:\Robotics Laboratory Support\Submissions\Wastewater\2023\2023-06-21\RSL-WW-20230621-1.xlsx" for example.
  • Improve plate mapping by using layout in submission forms rather than PCR.
  • Create a method for creation of hitpicking .csvs because of reasons that may or may not exist.
  • Create a method for commenting submissions.
  • Create barcode generator, because of reasons that may or may not exist.
  • Move bulk of functions from frontend.init to frontend.functions as init is getting bloated.