80 lines
4.3 KiB
Markdown
80 lines
4.3 KiB
Markdown
## Startup:
|
|
1. Open the app using the shortcut in the Submissions folder. For example: 'L:\Robotics Laboratory Support\Submissions\submissions_v122b.exe - Shortcut.lnk' (Version may have changed).
|
|
a. Ignore the large black window of fast scrolling text, it is there for debugging purposes.
|
|
b. The 'Submissions' tab should be open by default.
|
|
|
|
## Logging in New Run:
|
|
*should fit 90% of usage cases*
|
|
|
|
1. Ensure a properly formatted Submission Excel form has been filled out.
|
|
a. The program can fill in reagent fields and some other information automatically, but should be checked for accuracy afterwards.
|
|
2. Click on 'File' in the menu bar, followed by 'Import Submission' and use the file dialog to locate the form.
|
|
3. Click 'Ok'.
|
|
4. Most of the fields in the form should be automatically filled in from the form area to the left of the screen.
|
|
5. You may need to maximize the app to ensure you can see all the info.
|
|
6. Any fields that are not automatically filled in can be filled in manually from the drop down menus.
|
|
a. Any reagent lots not found in the drop downs can be typed in manually.
|
|
7. Once you are certain all the information is correct, click 'Submit' at the bottom of the form.
|
|
8. Add in any new reagents the app doesn't have in the database.
|
|
9. Once the new run shows up at the bottom of the Submissions, everything is fine.
|
|
10. In case of any mistakes, the run can be overwritten by a reimport.
|
|
|
|
## Check existing Run:
|
|
|
|
1. Details of existing runs can be checked by double clicking on the row of interest in the summary sheet on the right of the 'Submissions' tab.
|
|
2. All information available on the run should be available in the resulting text window. This information can be exported by clicking 'Export PDF' at the top.
|
|
|
|
## Generating a report:
|
|
|
|
1. Click on 'Reports' -> 'Make Report' in the menu bar.
|
|
2. Select the start date and the end date you want for the report. Click 'ok'.
|
|
3. Use the file dialog to select a location to save the report.
|
|
a. Both an excel sheet and a pdf should be generated containing summary information for submissions made by each client lab.
|
|
|
|
## Importing PCR results:
|
|
|
|
This is meant to import .xslx files created from the Design & Analysis Software
|
|
1. Click on 'File' -> 'Import PCR Results'.
|
|
2. Use the file dialog to locate the .xlsx file you want to import.
|
|
3. Click 'Okay'.
|
|
|
|
## Checking Controls:
|
|
|
|
1. Controls for bacterial runs are now incorporated directly into the submissions database using webview. (Admittedly this performance is not as good as with a browser, so you will have to triage your data)
|
|
2. Click on the "Controls" tab.
|
|
3. Range of dates for controls can be selected from the date pickers at the top.
|
|
a. If start date is set after end date, the start date will default back to 3 months before end date.
|
|
b. Recommendation is to use less than 6 month date range keeping in mind that higher data density will affect performance (with kraken being the worst so far)
|
|
4. Analysis type and subtype can be set using the drop down menus. (Only kraken has a subtype so far).
|
|
|
|
## Adding new Kit:
|
|
|
|
1. Click "Add Kit" tab in the tab bar.
|
|
2. Select the Submission type from the drop down menu.
|
|
3. Fill in the kit name (required) and other fields (optional).
|
|
4. For each reagent type in the kit click the "Add Reagent Type" button.
|
|
5. Fill in the name of the reagent type. Alternatively select from already existing types in the drop down.
|
|
6. Fill in the reagent location in the excel submission sheet.
|
|
a. For example if the reagent name is in a sheet called "Reagent Info" in row 12, column 1, type "Reagent Info" in the "Excel Location Sheet Name" field.
|
|
b. Set 12 in the "Name Row" and 1 in the "Name Column".
|
|
c. Repeat 6b for the Lot and the Expiry row and columns.
|
|
7. Click the "Submit" button at the top.
|
|
|
|
## Linking Controls:
|
|
|
|
1. Click "Monthly" -> "Link Controls". Entire process should be handled automatically.
|
|
|
|
## Linking Extraction Logs:
|
|
|
|
1. Click "Monthly" -> "Link Extraction Logs".
|
|
2. Chose the .csv file taken from the extraction table runlogs folder.
|
|
|
|
## Linking PCR Logs:
|
|
1. Click "Monthly" -> "Link PCR Logs".
|
|
2. Chose the .csv file taken from the PCR table runlogs folder.
|
|
|
|
## Hitpicking:
|
|
1. Select all submissions you wish to hitpick using "Ctrl + click". All must have PCR results.
|
|
2. Right click on the last sample and select "Hitpick" from the contex menu.
|
|
3. Select location to save csv file.
|