45 lines
2.3 KiB
Python
45 lines
2.3 KiB
Python
# __init__.py
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from pathlib import Path
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# Version of the realpython-reader package
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__project__ = "submissions"
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__version__ = "202402.1b"
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__author__ = {"name":"Landon Wark", "email":"Landon.Wark@phac-aspc.gc.ca"}
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__copyright__ = "2022-2024, Government of Canada"
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project_path = Path(__file__).parents[2].absolute()
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class bcolors:
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HEADER = '\033[95m'
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OKBLUE = '\033[94m'
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OKCYAN = '\033[96m'
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OKGREEN = '\033[92m'
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WARNING = '\033[93m'
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FAIL = '\033[91m'
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ENDC = '\033[0m'
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BOLD = '\033[1m'
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UNDERLINE = '\033[4m'
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# Hello Landon, this is your past self here. I'm trying not to screw you over like I usually do, so I will
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# set out the workflow I've imagined for creating new submission types.
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# First of all, you will need to write new parsing methods in backend.excel.parser to pull information out of the submission form
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# for the submission itself as well as for any samples you can pull out of that same workbook.
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# The workbooks no longer need a sheet map, but they do need their submission type put in the categories metadata of the client excel template.
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# Second, you will have to update the model in backend.db.models.submissions and provide a new polymorph to the BasicSubmission object.
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# The BSO should hold the majority of the general info.
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# You can also update any of the parsers to pull out any custom info you need, like enforcing RSL plate numbers, scraping PCR results, etc.
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# Landon, this is your slightly less past self here. For the most part, Past Landon has not screwed us. I've been able to add in the
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# Wastewater Artic with minimal difficulties, except that the parser of the non-standard, user-generated excel sheets required slightly
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# more work.
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# Landon, this is your even more slightly less past self here. I've overhauled a lot of stuff to make things more flexible, so you should
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# hopefully be even less screwed than before... at least with regards to parsers. The addition of kits and such is another story. Putting that
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# On the todo list.
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'''
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Landon, this is 2023-11-07 Landon here in a comment string no less. Really all you should have to do now to add in new experiments is create a new
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BasicSubmission derivative with associated SubbmissionType, BasicSample (and maybe SubmissionSampleAssociation if you're feeling lucky), oh, also,
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kits, reagenttypes, reagents... This is sounding less and less impressive as I type it.
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''' |