60 lines
2.5 KiB
Python
60 lines
2.5 KiB
Python
"""added versions to ref/kraken
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Revision ID: 3d80e4a17a26
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Revises: 785bb1140878
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Create Date: 2023-03-02 13:09:30.750398
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"""
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from alembic import op
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import sqlalchemy as sa
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from sqlalchemy.dialects import sqlite
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# revision identifiers, used by Alembic.
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revision = '3d80e4a17a26'
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down_revision = '785bb1140878'
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branch_labels = None
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depends_on = None
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def upgrade() -> None:
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# ### commands auto generated by Alembic - please adjust! ###
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# op.drop_table('_alembic_tmp__submissions')
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with op.batch_alter_table('_control_samples', schema=None) as batch_op:
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batch_op.add_column(sa.Column('refseq_version', sa.String(length=16), nullable=True))
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batch_op.add_column(sa.Column('kraken2_version', sa.String(length=16), nullable=True))
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batch_op.add_column(sa.Column('kraken2_db_version', sa.String(length=32), nullable=True))
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# ### end Alembic commands ###
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def downgrade() -> None:
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# ### commands auto generated by Alembic - please adjust! ###
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with op.batch_alter_table('_control_samples', schema=None) as batch_op:
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batch_op.drop_column('kraken2_db_version')
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batch_op.drop_column('kraken2_version')
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batch_op.drop_column('refseq_version')
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# op.create_table('_alembic_tmp__submissions',
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# sa.Column('id', sa.INTEGER(), nullable=False),
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# sa.Column('rsl_plate_num', sa.VARCHAR(length=32), nullable=False),
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# sa.Column('submitter_plate_num', sa.VARCHAR(length=127), nullable=True),
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# sa.Column('submitted_date', sa.TIMESTAMP(), nullable=True),
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# sa.Column('submitting_lab_id', sa.INTEGER(), nullable=True),
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# sa.Column('sample_count', sa.INTEGER(), nullable=True),
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# sa.Column('extraction_kit_id', sa.INTEGER(), nullable=True),
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# sa.Column('submission_type', sa.VARCHAR(length=32), nullable=True),
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# sa.Column('technician', sa.VARCHAR(length=64), nullable=True),
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# sa.Column('reagents_id', sa.VARCHAR(), nullable=True),
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# sa.Column('extraction_info', sqlite.JSON(), nullable=True),
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# sa.Column('run_cost', sa.FLOAT(), nullable=True),
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# sa.Column('uploaded_by', sa.VARCHAR(length=32), nullable=True),
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# sa.ForeignKeyConstraint(['extraction_kit_id'], ['_kits.id'], ondelete='SET NULL'),
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# sa.ForeignKeyConstraint(['reagents_id'], ['_reagents.id'], ondelete='SET NULL'),
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# sa.ForeignKeyConstraint(['submitting_lab_id'], ['_organizations.id'], ondelete='SET NULL'),
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# sa.PrimaryKeyConstraint('id'),
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# sa.UniqueConstraint('rsl_plate_num'),
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# sa.UniqueConstraint('submitter_plate_num')
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# )
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# ### end Alembic commands ###
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