landon/Submissions-App
1
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity

Pending large code cleanup

Browse Source
This commit is contained in:
Landon Wark
2024-01-31 15:21:07 -06:00
parent 319f72cab2
commit eda62fba5a
19 changed files with 741 additions and 103 deletions
Download Patch File Download Diff File Expand all files Collapse all files

14
src/submissions/frontend/widgets/gel_checker.py
View File

@@ -1,7 +1,7 @@
# import required modules
from PyQt6.QtCore import Qt
# from PyQt6.QtCore import Qt
from PyQt6.QtWidgets import *
import sys
# import sys
from PyQt6.QtWidgets import QWidget
import numpy as np
import pyqtgraph as pg
@@ -13,12 +13,13 @@ import numpy as np
# Main window class
class GelBox(QDialog):
def __init__(self, parent):
def __init__(self, parent, img_path):
super().__init__(parent)
# setting title
self.setWindowTitle("PyQtGraph")
self.img_path = img_path
# setting geometry
self.setGeometry(100, 100, 600, 500)
self.setGeometry(50, 50, 1200, 900)
# icon
icon = QIcon("skin.png")
# setting icon to the window
@@ -35,7 +36,7 @@ class GelBox(QDialog):
pg.setConfigOptions(antialias=True)
# creating image view object
self.imv = pg.ImageView()
img = np.array(Image.open("C:\\Users\\lwark\\Desktop\\PLATE1_17012024_103607AM_1_4x26.jpg").rotate(-90).transpose(Image.FLIP_LEFT_RIGHT))
img = np.array(Image.open(self.img_path).rotate(-90).transpose(Image.FLIP_LEFT_RIGHT))
self.imv.setImage(img)#, xvals=np.linspace(1., 3., data.shape[0]))
layout = QGridLayout()
# setting this layout to the widget
@@ -54,7 +55,7 @@ class GelBox(QDialog):
self.setLayout(layout)
def parse_form(self):
return self.form.parse_form()
return self.img_path, self.form.parse_form()
class ControlsForm(QWidget):
@@ -79,6 +80,7 @@ class ControlsForm(QWidget):
for iii in range(3):
for jjj in range(3):
widge = QLineEdit()
widge.setText("Neg")
widge.setObjectName(f"{rows[iii]} : {columns[jjj]}")
self.layout.addWidget(widge, iii+1, jjj+2, 1, 1)
self.setLayout(self.layout)

11
src/submissions/frontend/widgets/submission_widget.py
View File

@@ -312,11 +312,12 @@ class SubmissionFormContainer(QWidget):
# update_last_used(reagent=reagent, kit=base_submission.extraction_kit)
reagent.update_last_used(kit=base_submission.extraction_kit)
# sys.exit()
logger.debug(f"Here is the final submission: {pformat(base_submission.__dict__)}")
logger.debug(f"Parsed reagents: {pformat(base_submission.reagents)}")
logger.debug(f"Sending submission: {base_submission.rsl_plate_num} to database.")
logger.debug(f"Samples from pyd: {pformat(self.pyd.samples)}")
logger.debug(f"Samples SQL: {pformat([item.__dict__ for item in base_submission.samples])}")
# logger.debug(f"Here is the final submission: {pformat(base_submission.__dict__)}")
# logger.debug(f"Parsed reagents: {pformat(base_submission.reagents)}")
# logger.debug(f"Sending submission: {base_submission.rsl_plate_num} to database.")
# logger.debug(f"Samples from pyd: {pformat(self.pyd.samples)}")
# logger.debug(f"Samples SQL: {pformat([item.__dict__ for item in base_submission.samples])}")
# logger.debug(f"")
base_submission.save()
# update summary sheet
self.app.table_widget.sub_wid.setData()