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Created Sample verification before import.

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This commit is contained in:
lwark
2025-03-27 15:02:18 -05:00
parent f215972b9d
commit e355aee5de
9 changed files with 179 additions and 416 deletions
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18
src/submissions/backend/excel/reports.py
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@@ -202,19 +202,21 @@ class ConcentrationMaker(ReportArchetype):
# NOTE: Set page size to zero to override limiting query size.
self.subs = BasicSubmission.query(start_date=start_date, end_date=end_date,
submission_type_name=submission_type, page_size=0)
self.controls = list(itertools.chain.from_iterable([sub.controls for sub in self.subs]))
# self.known_controls = list(itertools.chain.from_iterable([sub.controls for sub in self.subs]))
self.controls = list(itertools.chain.from_iterable([sub.get_provisional_controls() for sub in self.subs]))
self.records = [self.build_record(control) for control in self.controls]
self.df = DataFrame.from_records(self.records)
self.sheet_name = "Concentration"
@classmethod
def build_record(cls, control: IridaControl) -> dict:
positive = control.is_positive_control
concentration = control.sample.concentration
if not concentration:
concentration = 0
return dict(name=control.name,
submission=str(control.submission.rsl_plate_num), concentration=concentration,
def build_record(cls, control) -> dict:
positive = not control.submitter_id.lower().startswith("en")
try:
concentration = float(control.concentration)
except (TypeError, ValueError):
concentration = 0.0
return dict(name=control.submitter_id,
submission=str(control.submission), concentration=concentration,
submitted_date=control.submitted_date, positive=positive)