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new parsers/DB objects, pre code cleanup

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Landon Wark
2023-09-06 08:41:08 -05:00
parent bc7a3b8f5f
commit e0b80f6c7a
12 changed files with 263 additions and 137 deletions
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56
src/submissions/templates/submission_details.html
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@@ -7,28 +7,16 @@
<body>
<h2><u>Submission Details for {{ sub['Plate Number'] }}</u></h2>&nbsp;&nbsp;&nbsp;<img align='right' height="30px" width="120px" src="data:image/jpeg;base64,{{ sub['barcode'] | safe }}">
<p>{% for key, value in sub.items() if key not in excluded %}
<!-- {% if loop.index == 1 %} -->
<!-- &nbsp;&nbsp;&nbsp;<b>{{ key }}:</b> {% if key=='Cost' %}{{ "${:,.2f}".format(value) }}{% else %}{{ value }}{% endif %}<br> -->
<!-- {% else %} -->
&nbsp;&nbsp;&nbsp;&nbsp;<b>{{ key }}: </b>{% if key=='Cost' %} {{ "${:,.2f}".format(value) }}{% else %}{{ value }}{% endif %}<br>
<!-- {% endif %} -->
&nbsp;&nbsp;&nbsp;&nbsp;<b>{{ key }}: </b>{% if key=='Cost' %} {{ "${:,.2f}".format(value) }}{% else %}{{ value }}{% endif %}<br>
{% endfor %}</p>
<h3><u>Reagents:</u></h3>
<p>{% for item in sub['reagents'] %}
<!-- {% if loop.index == 1%} -->
<!-- &nbsp;&nbsp;&nbsp;<b>{{ item['type'] }}:</b> {{ item['lot'] }} (EXP: {{ item['expiry'] }})<br> -->
<!-- {% else %} -->
&nbsp;&nbsp;&nbsp;&nbsp;<b>{{ item['type'] }}</b>: {{ item['lot'] }} (EXP: {{ item['expiry'] }})<br>
<!-- {% endif %} -->
&nbsp;&nbsp;&nbsp;&nbsp;<b>{{ item['type'] }}</b>: {{ item['lot'] }} (EXP: {{ item['expiry'] }})<br>
{% endfor %}</p>
{% if sub['samples'] %}
<h3><u>Samples:</u></h3>
<p>{% for item in sub['samples'] %}
<!-- {% if loop.index == 1 %} -->
<!-- &nbsp;&nbsp;&nbsp;<b>{{ item['well'] }}:</b> {{ item['name']|replace('\n\t', '<br>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;') }}<br> -->
<!-- {% else %} -->
&nbsp;&nbsp;&nbsp;&nbsp;<b>{{ item['well'] }}:</b> {{ item['name']|replace('\n\t', '<br>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;') }}<br>
<!-- {% endif %} -->
&nbsp;&nbsp;&nbsp;&nbsp;<b>{{ item['well'] }}:</b> {{ item['name']|replace('\n\t', '<br>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;') }}<br>
{% endfor %}</p>
{% endif %}
{% if sub['controls'] %}
@@ -38,11 +26,7 @@
{% if item['kraken'] %}
<p>&nbsp;&nbsp;&nbsp;{{ item['name'] }} Top 5 Kraken Results:</p>
<p>{% for genera in item['kraken'] %}
<!-- {% if loop.index == 1 %} -->
<!-- &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;{{ genera['name'] }}: {{ genera['kraken_count'] }} ({{ genera['kraken_percent'] }})<br> -->
<!-- {% else %} -->
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;{{ genera['name'] }}: {{ genera['kraken_count'] }} ({{ genera['kraken_percent'] }})<br>
<!-- {% endif %} -->
{% endfor %}</p>
{% endif %}
{% endfor %}
@@ -51,15 +35,11 @@
{% for entry in sub['ext_info'] %}
<h3><u>Extraction Status:</u></h3>
<p>{% for key, value in entry.items() %}
<!-- {% if loop.index == 1 %} -->
<!-- &nbsp;&nbsp;&nbsp;<b>{{ key|replace('_', ' ')|title() }}:</b> {{ value }}<br> -->
<!-- {% else %} -->
{% if "column" in key %}
&nbsp;&nbsp;&nbsp;&nbsp;<b>{{ key|replace('_', ' ')|title() }}:</b> {{ value }}uL<br>
{% else %}
&nbsp;&nbsp;&nbsp;&nbsp;<b>{{ key|replace('_', ' ')|title() }}:</b> {{ value }}<br>
{% endif %}
<!-- {% endif %} -->
{% if "column" in key %}
&nbsp;&nbsp;&nbsp;&nbsp;<b>{{ key|replace('_', ' ')|title() }}:</b> {{ value }}uL<br>
{% else %}
&nbsp;&nbsp;&nbsp;&nbsp;<b>{{ key|replace('_', ' ')|title() }}:</b> {{ value }}<br>
{% endif %}
{% endfor %}</p>
{% endfor %}
{% endif %}
@@ -71,26 +51,18 @@
<h3><u>qPCR Status:</u></h3>
{% endif %}
<p>{% for key, value in entry.items() if key != 'imported_by'%}
<!-- {% if loop.index == 1 %} -->
<!-- &nbsp;&nbsp;&nbsp;<b>{{ key|replace('_', ' ')|title() }}:</b> {{ value }}<br> -->
<!-- {% else %} -->
{% if "column" in key %}
&nbsp;&nbsp;&nbsp;&nbsp;<b>{{ key|replace('_', ' ')|title() }}:</b> {{ value }}uL<br>
{% else %}
&nbsp;&nbsp;&nbsp;&nbsp;<b>{{ key|replace('_', ' ')|title() }}:</b> {{ value }}<br>
{% endif %}
<!-- {% endif %} -->
{% if "column" in key %}
&nbsp;&nbsp;&nbsp;&nbsp;<b>{{ key|replace('_', ' ')|title() }}:</b> {{ value }}uL<br>
{% else %}
&nbsp;&nbsp;&nbsp;&nbsp;<b>{{ key|replace('_', ' ')|title() }}:</b> {{ value }}<br>
{% endif %}
{% endfor %}</p>
{% endfor %}
{% endif %}
{% if sub['comments'] %}
<h3><u>Comments:</u></h3>
<p>{% for entry in sub['comments'] %}
<!-- {% if loop.index == 1 %} -->
<!-- &nbsp;&nbsp;&nbsp;<b>{{ entry['name'] }}:</b><br> {{ entry['text'] }}<br>- {{ entry['time'] }}<br> -->
<!-- {% else %} -->
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;<b>{{ entry['name'] }}:</b><br> {{ entry['text'] }}<br>- {{ entry['time'] }}<br>
<!-- {% endif %} -->
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;<b>{{ entry['name'] }}:</b><br> {{ entry['text'] }}<br>- {{ entry['time'] }}<br>
{% endfor %}</p>
{% endif %}
{% if sub['platemap'] %}