Updated parsers and chart constructors.

src/submissions/backend/db/models/controls.py

@@ -105,6 +105,9 @@ class Control(Base):
             for key in data[genus]:
                 _dict[key] = data[genus][key]
             output.append(_dict)
+        # Have to triage kraken data to keep program from getting overwhelmed
+        if "kraken" in mode:
+            output = sorted(output, key=lambda d: d[f"{mode}_count"], reverse=True)[:49]
         return output
     
     def create_dummy_data(self, mode:str) -> dict:

src/submissions/backend/db/models/kits.py

@@ -25,8 +25,8 @@ class KitType(Base):
     submissions = relationship("BasicSubmission", back_populates="extraction_kit") #: submissions this kit was used for
     used_for = Column(JSON) #: list of names of sample types this kit can process
     cost_per_run = Column(FLOAT(2)) #: dollar amount for each full run of this kit NOTE: depreciated, use the constant and mutable costs instead
-    mutable_cost = Column(FLOAT(2)) #: dollar amount that can change with number of columns (reagents, tips, etc)
-    constant_cost = Column(FLOAT(2)) #: dollar amount that will remain constant (plates, man hours, etc)
+    mutable_cost = Column(FLOAT(2)) #: dollar amount per plate that can change with number of columns (reagents, tips, etc)
+    constant_cost = Column(FLOAT(2)) #: dollar amount per plate that will remain constant (plates, man hours, etc)
     reagent_types = relationship("ReagentType", back_populates="kits", uselist=True, secondary=reagenttypes_kittypes) #: reagent types this kit contains
     reagent_types_id = Column(INTEGER, ForeignKey("_reagent_types.id", ondelete='SET NULL', use_alter=True, name="fk_KT_reagentstype_id")) #: joined reagent type id
     
@@ -110,4 +110,16 @@ class Reagent(Base):
             "type": type,
             "lot": self.lot,
             "expiry": place_holder.strftime("%Y-%m-%d")
-        }
+        }
+    
+
+# class Discounts(Base):
+#     """
+#     Relationship table for client labs for certain kits.
+#     """
+#     __tablename__ = "_discounts"
+
+#     id = Column(INTEGER, primary_key=True) #: primary key
+#     kit = relationship("KitType") #: joined parent reagent type
+#     kit_id = Column(INTEGER, ForeignKey("_kits.id", ondelete='SET NULL', name="fk_kit_type_id"))
+#     client = relationship("Organization")