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Added SubmissionType to KitRTAssoc

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This commit is contained in:
Landon Wark
2024-01-08 13:19:27 -06:00
parent 8c688df75f
commit d66d861262
3 changed files with 275 additions and 103 deletions
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3
src/submissions/backend/excel/parser.py
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@@ -211,6 +211,7 @@ class ReagentParser(object):
logger.debug("\n\nHello from ReagentParser!\n\n")
# self.ctx = ctx
self.map = self.fetch_kit_info_map(extraction_kit=extraction_kit, submission_type=submission_type)
logger.debug(f"Reagent Parser map: {self.map}")
self.xl = xl
def fetch_kit_info_map(self, extraction_kit:dict, submission_type:str) -> dict:
@@ -523,7 +524,7 @@ class EquipmentParser(object):
asset = self.get_asset_number(input=asset)
eq = Equipment.query(asset_number=asset)
process = df.iat[equipment['process']['row']-1, equipment['process']['column']-1]
output.append(PydEquipment(name=eq.name, process=[process], role=equipment['role'], asset_number=asset, nickname=eq.nickname))
output.append(PydEquipment(name=eq.name, process=process, role=equipment['role'], asset_number=asset, nickname=eq.nickname))
# logger.debug(f"Here is the output so far: {pformat(output)}")
return output