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README.md
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## Logging in New Run:
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*should fit 90% of usage cases*
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1. Ensure a properly formatted Submission Excel form has been filled out. (It will save you a few headaches)
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a. All fields should be filled in to ensure proper lookups of reagents.
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2. Open the app using the shortcut in the Submissions folder. For example: "L:\Robotics Laboratory Support\Submissions\submissions_v122b.exe - Shortcut.lnk" (Version may have changed).
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a. Ignore the large black window of fast scrolling text, it is there for debugging purposes.
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b. The 'Submissions' tab should be open by default.
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3. Click on 'File' in the menu bar, followed by 'Import' and use the locate the form you definitely made sure was properly filled out in step 1.
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4. Click "Ok".
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5. Most of the fields in the form should be automatically filled in from the form area to the left of the screen.
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6. You may need to maximize the app to ensure you can see all the info.
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7. Any fields that are not automatically filled in can be filled in manually from the drop down menus.
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8. Once you are certain all the information is correct, click 'Submit' at the bottom of the form.
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9. Add in any reagents the app doesn't recognize.
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10. Once the new run shows up at the bottom of the Submissions, everything is fine.
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11. In case of any mistakes, the run can be overwritten by a reimport.
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## Check existing Run:
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1. Details of existing runs can be checked by double clicking on the row of interest in the summary sheet on the right of the 'Submissions' tab.
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2. All information available on the run should be available in the resulting text window. This information can be exported by clicking 'Export PDF' at the top.
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## Generating a report:
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1. Click on 'Reports' -> 'Make Report' in the menu bar.
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2. Select the start date and the end date you want for the report. Click 'ok'.
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3. Use the file dialog to select a location to save the report.
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a. Both an excel sheet and a pdf should be generated containing summary information for submissions made by each client lab.
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## Checking Controls:
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1. Controls for bacterial runs are now incorporated directly into the submissions database using webview. (Admittedly this performance is not as good as with a browser, so you will have to triage your data)
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2. Click on the "Controls" tab.
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3. Range of dates for controls can be selected from the date pickers at the top.
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a. If start date is set after end date, the start date will default back to 3 months before end date.
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b. Recommendation is to use less than 6 month date range keeping in mind that higher data density will affect performance (with kraken being the worst so far)
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4. Analysis type and subtype can be set using the drop down menus. (Only kraken has a subtype so far).
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## Adding new Kit:
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1. Instructions to come.
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