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Added in checkbox to use all samples in Concentrations tab (very slow).

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lwark
2025-04-02 12:16:12 -05:00
parent e355aee5de
commit d3807dac57
10 changed files with 184 additions and 49 deletions
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8
src/submissions/backend/excel/reports.py
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@@ -196,20 +196,22 @@ class TurnaroundMaker(ReportArchetype):
class ConcentrationMaker(ReportArchetype):
def __init__(self, start_date: date, end_date: date, submission_type: str = "Bacterial Culture"):
def __init__(self, start_date: date, end_date: date, submission_type: str = "Bacterial Culture",
controls_only: bool = True):
self.start_date = start_date
self.end_date = end_date
# NOTE: Set page size to zero to override limiting query size.
self.subs = BasicSubmission.query(start_date=start_date, end_date=end_date,
submission_type_name=submission_type, page_size=0)
# self.known_controls = list(itertools.chain.from_iterable([sub.controls for sub in self.subs]))
self.controls = list(itertools.chain.from_iterable([sub.get_provisional_controls() for sub in self.subs]))
self.records = [self.build_record(control) for control in self.controls]
self.samples = list(itertools.chain.from_iterable([sub.get_provisional_controls(controls_only=controls_only) for sub in self.subs]))
self.records = [self.build_record(sample) for sample in self.samples]
self.df = DataFrame.from_records(self.records)
self.sheet_name = "Concentration"
@classmethod
def build_record(cls, control) -> dict:
positive = not control.submitter_id.lower().startswith("en")
try:
concentration = float(control.concentration)