landon/Submissions-App
1
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity

Pre-reagent/submission association update.

Browse Source
This commit is contained in:
Landon Wark
2023-12-05 12:12:07 -06:00
parent cddb947ec8
commit cbf36a5b0b
8 changed files with 63 additions and 6 deletions
Download Patch File Download Diff File Expand all files Collapse all files

11
src/submissions/frontend/visualizations/plate_map.py
View File

@@ -31,10 +31,14 @@ def make_plate_map(sample_list:list) -> Image:
# Go through samples and change its row/column to red if positive, else blue
for sample in sample_list:
logger.debug(f"sample keys: {list(sample.keys())}")
# set color of square
if sample['positive']:
colour = [255,0,0]
else:
colour = [0,0,255]
if 'colour' in sample.keys():
colour = sample['colour']
else:
colour = [0,0,255]
grid[int(sample['row'])-1][int(sample['column'])-1] = colour
# Create pixel image from the grid and enlarge
img = Image.fromarray(grid).resize((1200, 800), resample=Image.NEAREST)
@@ -99,7 +103,10 @@ def make_plate_map_html(sample_list:list, plate_rows:int=8, plate_columns=12) ->
if sample['positive']:
sample['background_color'] = "#f10f07"
else:
sample['background_color'] = "#80cbc4"
if "colour" in sample.keys():
sample['background_color'] = "#69d84f"
else:
sample['background_color'] = "#80cbc4"
output_samples = []
for column in range(1, plate_columns+1):
for row in range(1, plate_rows+1):