Pre-reagent/submission association update.

This commit is contained in:
Landon Wark
2023-12-05 12:12:07 -06:00
parent cddb947ec8
commit cbf36a5b0b
8 changed files with 63 additions and 6 deletions

View File

@@ -58,7 +58,7 @@ class BasicSubmission(BaseClass):
run_cost = Column(FLOAT(2)) #: total cost of running the plate. Set from constant and mutable kit costs at time of creation.
uploaded_by = Column(String(32)) #: user name of person who submitted the submission to the database.
comment = Column(JSON) #: user notes
submission_category = Column(String(64)) #: ["Research", "Diagnostic", "Surveillance"], else defaults to submission_type_name
submission_category = Column(String(64)) #: ["Research", "Diagnostic", "Surveillance", "Validation"], else defaults to submission_type_name
submission_sample_associations = relationship(
"SubmissionSampleAssociation",
@@ -1483,6 +1483,7 @@ class BacterialCultureSample(BasicSample):
# id = Column(INTEGER, ForeignKey('basicsample.id'), primary_key=True)
organism = Column(String(64)) #: bacterial specimen
concentration = Column(String(16)) #: sample concentration
control = relationship("Control", back_populates="sample", uselist=False)
__mapper_args__ = {"polymorphic_identity": "Bacterial Culture Sample", "polymorphic_load": "inline"}
def to_sub_dict(self, submission_rsl:str) -> dict:
@@ -1496,6 +1497,13 @@ class BacterialCultureSample(BasicSample):
sample['name'] = f"{self.submitter_id} - ({self.organism})"
return sample
def to_hitpick(self, submission_rsl: str | None = None) -> dict | None:
sample = super().to_hitpick(submission_rsl)
if self.control != None:
sample['colour'] = [0,128,0]
sample['tooltip'] += f"<br>- Control: {self.control.controltype.name} - {self.control.controltype.targets}"
return sample
# Submission to Sample Associations
class SubmissionSampleAssociation(BaseClass):