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Added report tab with HTML and excel export.

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This commit is contained in:
lwark
2024-10-04 11:30:22 -05:00
parent c5470b9062
commit c89ec2b62c
12 changed files with 295 additions and 181 deletions
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26
src/submissions/frontend/widgets/app.py
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@@ -24,6 +24,7 @@ from .controls_chart import ControlsViewer
from .kit_creator import KitAdder
from .submission_type_creator import SubmissionTypeAdder, SubmissionType
from .sample_search import SearchBox
from .summary import Summary
logger = logging.getLogger(f'submissions.{__name__}')
logger.info("Hello, I am a logger")
@@ -69,7 +70,7 @@ class App(QMainWindow):
fileMenu = menuBar.addMenu("&File")
# NOTE: Creating menus using a title
methodsMenu = menuBar.addMenu("&Methods")
reportMenu = menuBar.addMenu("&Reports")
# reportMenu = menuBar.addMenu("&Reports")
maintenanceMenu = menuBar.addMenu("&Monthly")
helpMenu = menuBar.addMenu("&Help")
helpMenu.addAction(self.helpAction)
@@ -80,7 +81,7 @@ class App(QMainWindow):
fileMenu.addAction(self.yamlImportAction)
methodsMenu.addAction(self.searchLog)
methodsMenu.addAction(self.searchSample)
reportMenu.addAction(self.generateReportAction)
# reportMenu.addAction(self.generateReportAction)
maintenanceMenu.addAction(self.joinExtractionAction)
maintenanceMenu.addAction(self.joinPCRAction)
@@ -102,7 +103,7 @@ class App(QMainWindow):
# logger.debug(f"Creating actions...")
self.importAction = QAction("&Import Submission", self)
self.addReagentAction = QAction("Add Reagent", self)
self.generateReportAction = QAction("Make Report", self)
# self.generateReportAction = QAction("Make Report", self)
self.addKitAction = QAction("Import Kit", self)
self.addOrgAction = QAction("Import Org", self)
self.joinExtractionAction = QAction("Link Extraction Logs")
@@ -122,7 +123,7 @@ class App(QMainWindow):
# logger.debug(f"Connecting actions...")
self.importAction.triggered.connect(self.table_widget.formwidget.importSubmission)
self.addReagentAction.triggered.connect(self.table_widget.formwidget.add_reagent)
self.generateReportAction.triggered.connect(self.table_widget.sub_wid.generate_report)
# self.generateReportAction.triggered.connect(self.table_widget.sub_wid.generate_report)
self.joinExtractionAction.triggered.connect(self.table_widget.sub_wid.link_extractions)
self.joinPCRAction.triggered.connect(self.table_widget.sub_wid.link_pcr)
self.helpAction.triggered.connect(self.showAbout)
@@ -254,8 +255,8 @@ class AddSubForm(QWidget):
# NOTE: Add tabs
self.tabs.addTab(self.tab1,"Submissions")
self.tabs.addTab(self.tab2,"Controls")
self.tabs.addTab(self.tab3, "Add SubmissionType")
self.tabs.addTab(self.tab4, "Add Kit")
self.tabs.addTab(self.tab3, "Summary Report")
# self.tabs.addTab(self.tab4, "Add Kit")
# NOTE: Create submission adder form
self.formwidget = SubmissionFormContainer(self)
self.formlayout = QVBoxLayout(self)
@@ -282,14 +283,15 @@ class AddSubForm(QWidget):
self.tab2.layout.addWidget(self.controls_viewer)
self.tab2.setLayout(self.tab2.layout)
# NOTE: create custom widget to add new tabs
ST_adder = SubmissionTypeAdder(self)
# ST_adder = SubmissionTypeAdder(self)
summary_report = Summary(self)
self.tab3.layout = QVBoxLayout(self)
self.tab3.layout.addWidget(ST_adder)
self.tab3.layout.addWidget(summary_report)
self.tab3.setLayout(self.tab3.layout)
kit_adder = KitAdder(self)
self.tab4.layout = QVBoxLayout(self)
self.tab4.layout.addWidget(kit_adder)
self.tab4.setLayout(self.tab4.layout)
# kit_adder = KitAdder(self)
# self.tab4.layout = QVBoxLayout(self)
# self.tab4.layout.addWidget(kit_adder)
# self.tab4.setLayout(self.tab4.layout)
# NOTE: add tabs to main widget
self.layout.addWidget(self.tabs)
self.setLayout(self.layout)