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Renaming ReagentType to ReagentRole

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This commit is contained in:
lwark
2024-06-07 14:15:19 -05:00
parent a355c5bb76
commit c7b6c90eac
8 changed files with 197 additions and 129 deletions
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6
src/submissions/backend/excel/parser.py
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@@ -139,7 +139,7 @@ class SheetParser(object):
# logger.debug(f"Submission dictionary coming into 'to_pydantic':\n{pformat(self.sub)}")
pyd_dict = copy(self.sub)
pyd_dict['samples'] = [PydSample(**sample) for sample in self.sub['samples']]
logger.debug(f"Reagents: {pformat(self.sub['reagents'])}")
# logger.debug(f"Reagents: {pformat(self.sub['reagents'])}")
pyd_dict['reagents'] = [PydReagent(**reagent) for reagent in self.sub['reagents']]
# logger.debug(f"Equipment: {self.sub['equipment']}")
try:
@@ -215,13 +215,13 @@ class InfoParser(object):
new = location
new['name'] = k
relevant.append(new)
logger.debug(f"relevant map for {sheet}: {pformat(relevant)}")
# logger.debug(f"relevant map for {sheet}: {pformat(relevant)}")
if not relevant:
continue
for item in relevant:
# NOTE: Get cell contents at this location
value = ws.cell(row=item['row'], column=item['column']).value
logger.debug(f"Value for {item['name']} = {value}")
# logger.debug(f"Value for {item['name']} = {value}")
match item['name']:
case "submission_type":
value, missing = is_missing(value)