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post documentation and code clean-up.

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This commit is contained in:
lwark
2024-07-03 15:13:55 -05:00
parent 12ca3157e5
commit c460e5eeca
21 changed files with 421 additions and 238 deletions
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61
src/submissions/frontend/widgets/misc.py
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@@ -27,15 +27,12 @@ class AddReagentForm(QDialog):
super().__init__()
if reagent_lot is None:
reagent_lot = reagent_role
self.setWindowTitle("Add Reagent")
QBtn = QDialogButtonBox.StandardButton.Ok | QDialogButtonBox.StandardButton.Cancel
self.buttonBox = QDialogButtonBox(QBtn)
self.buttonBox.accepted.connect(self.accept)
self.buttonBox.rejected.connect(self.reject)
# widget to get lot info
# NOTE: widget to get lot info
self.name_input = QComboBox()
self.name_input.setObjectName("name")
self.name_input.setEditable(True)
@@ -43,10 +40,10 @@ class AddReagentForm(QDialog):
self.lot_input = QLineEdit()
self.lot_input.setObjectName("lot")
self.lot_input.setText(reagent_lot)
# widget to get expiry info
# NOTE: widget to get expiry info
self.exp_input = QDateEdit(calendarPopup=True)
self.exp_input.setObjectName('expiry')
# if expiry is not passed in from gui, use today
# NOTE: if expiry is not passed in from gui, use today
if expiry is None:
self.exp_input.setDate(QDate.currentDate())
else:
@@ -54,17 +51,17 @@ class AddReagentForm(QDialog):
self.exp_input.setDate(expiry)
except TypeError:
self.exp_input.setDate(QDate.currentDate())
# widget to get reagent type info
# NOTE: widget to get reagent type info
self.type_input = QComboBox()
self.type_input.setObjectName('type')
self.type_input.addItems([item.name for item in ReagentRole.query()])
# logger.debug(f"Trying to find index of {reagent_type}")
# convert input to user friendly string?
# NOTE: convert input to user friendly string?
try:
reagent_role = reagent_role.replace("_", " ").title()
except AttributeError:
reagent_role = None
# set parsed reagent type to top of list
# NOTE: set parsed reagent type to top of list
index = self.type_input.findText(reagent_role, Qt.MatchFlag.MatchEndsWith)
if index >= 0:
self.type_input.setCurrentIndex(index)
@@ -110,12 +107,12 @@ class ReportDatePicker(QDialog):
def __init__(self) -> None:
super().__init__()
self.setWindowTitle("Select Report Date Range")
# make confirm/reject buttons
# NOTE: make confirm/reject buttons
QBtn = QDialogButtonBox.StandardButton.Ok | QDialogButtonBox.StandardButton.Cancel
self.buttonBox = QDialogButtonBox(QBtn)
self.buttonBox.accepted.connect(self.accept)
self.buttonBox.rejected.connect(self.reject)
# widgets to ask for dates
# NOTE: widgets to ask for dates
self.start_date = QDateEdit(calendarPopup=True)
self.start_date.setObjectName("start_date")
self.start_date.setDate(QDate.currentDate())
@@ -139,48 +136,6 @@ class ReportDatePicker(QDialog):
"""
return dict(start_date=self.start_date.date().toPyDate(), end_date = self.end_date.date().toPyDate())
class FirstStrandSalvage(QDialog):
def __init__(self, ctx:Settings, submitter_id:str, rsl_plate_num:str|None=None) -> None:
super().__init__()
if rsl_plate_num is None:
rsl_plate_num = ""
self.setWindowTitle("Add Reagent")
QBtn = QDialogButtonBox.StandardButton.Ok | QDialogButtonBox.StandardButton.Cancel
self.buttonBox = QDialogButtonBox(QBtn)
self.buttonBox.accepted.connect(self.accept)
self.buttonBox.rejected.connect(self.reject)
self.submitter_id_input = QLineEdit()
self.submitter_id_input.setText(submitter_id)
self.rsl_plate_num = QLineEdit()
self.rsl_plate_num.setText(rsl_plate_num)
self.row_letter = QComboBox()
self.row_letter.addItems(['A', 'B', 'C', 'D', 'E', 'F', 'G', 'H'])
self.row_letter.setEditable(False)
self.column_number = QComboBox()
self.column_number.addItems(['1', '2', '3', '4', '5', '6', '7', '8', '9', '10', '11', '12'])
self.column_number.setEditable(False)
self.layout = QFormLayout()
self.layout.addRow(self.tr("&Sample Number:"), self.submitter_id_input)
self.layout.addRow(self.tr("&Plate Number:"), self.rsl_plate_num)
self.layout.addRow(self.tr("&Source Row:"), self.row_letter)
self.layout.addRow(self.tr("&Source Column:"), self.column_number)
self.layout.addWidget(self.buttonBox)
self.setLayout(self.layout)
def parse_form(self) -> dict:
"""
Pulls first strand info from form.
Returns:
dict: Output info
"""
return dict(plate=self.rsl_plate_num.text(), submitter_id=self.submitter_id_input.text(), well=f"{self.row_letter.currentText()}{self.column_number.currentText()}")
class LogParser(QDialog):
def __init__(self, parent):