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post documentation and code clean-up.

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lwark
2024-07-03 15:13:55 -05:00
parent 12ca3157e5
commit c460e5eeca
21 changed files with 421 additions and 238 deletions
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12
src/submissions/frontend/widgets/app.py
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@@ -62,7 +62,7 @@ class App(QMainWindow):
# logger.debug(f"Creating menu bar...")
menuBar = self.menuBar()
fileMenu = menuBar.addMenu("&File")
# Creating menus using a title
# NOTE: Creating menus using a title
methodsMenu = menuBar.addMenu("&Methods")
reportMenu = menuBar.addMenu("&Reports")
maintenanceMenu = menuBar.addMenu("&Monthly")
@@ -70,7 +70,6 @@ class App(QMainWindow):
helpMenu.addAction(self.helpAction)
helpMenu.addAction(self.docsAction)
fileMenu.addAction(self.importAction)
# fileMenu.addAction(self.importPCRAction)
methodsMenu.addAction(self.searchLog)
methodsMenu.addAction(self.searchSample)
reportMenu.addAction(self.generateReportAction)
@@ -94,7 +93,6 @@ class App(QMainWindow):
"""
# logger.debug(f"Creating actions...")
self.importAction = QAction("&Import Submission", self)
# self.importPCRAction = QAction("&Import PCR Results", self)
self.addReagentAction = QAction("Add Reagent", self)
self.generateReportAction = QAction("Make Report", self)
self.addKitAction = QAction("Import Kit", self)
@@ -112,7 +110,6 @@ class App(QMainWindow):
"""
# logger.debug(f"Connecting actions...")
self.importAction.triggered.connect(self.table_widget.formwidget.importSubmission)
# self.importPCRAction.triggered.connect(self.table_widget.formwidget.import_pcr_results)
self.addReagentAction.triggered.connect(self.table_widget.formwidget.add_reagent)
self.generateReportAction.triggered.connect(self.table_widget.sub_wid.generate_report)
self.joinExtractionAction.triggered.connect(self.table_widget.sub_wid.link_extractions)
@@ -166,12 +163,17 @@ class App(QMainWindow):
dlg.exec()
def runSampleSearch(self):
"""
Create a search for samples.
"""
dlg = SearchBox(self)
dlg.exec()
def backup_database(self):
"""
Copies the database into the backup directory the first time it is opened every month.
"""
month = date.today().strftime("%Y-%m")
# day = date.today().strftime("%Y-%m-%d")
# logger.debug(f"Here is the db directory: {self.ctx.database_path}")
# logger.debug(f"Here is the backup directory: {self.ctx.backup_path}")
current_month_bak = Path(self.ctx.backup_path).joinpath(f"submissions_backup-{month}").resolve().with_suffix(".db")