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Improved retrieval of existing reagents.

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This commit is contained in:
Landon Wark
2023-02-08 12:06:11 -06:00
parent 963ac7d4a4
commit c3db706e7c
8 changed files with 249 additions and 40 deletions
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58
src/submissions/templates/submission_details.html
View File

@@ -5,28 +5,58 @@
</head>
<body>
<h2><u>Submission Details for {{ sub['Plate Number'] }}</u></h2>
{% for key, value in sub.items() if key != 'reagents' and key != 'samples' and key != 'controls' %}
{% if key=='Cost' %} <p>{{ key }}: {{ "${:,.2f}".format(value) }}</p> {% else %} <p>{{ key }}: {{ value }}</p> {% endif %}
{% endfor %}
<p>{% for key, value in sub.items() if key != 'reagents' and key != 'samples' and key != 'controls' and key != 'ext_info' %}
{% if loop.index == 1 %}
&nbsp;&nbsp;&nbsp;{% if key=='Cost' %}{{ key }}: {{ "${:,.2f}".format(value) }}{% else %}{{ key }}: {{ value }}{% endif %}<br>
{% else %}
&nbsp;&nbsp;&nbsp;&nbsp;{% if key=='Cost' %}{{ key }}: {{ "${:,.2f}".format(value) }}{% else %}{{ key }}: {{ value }}{% endif %}<br>
{% endif %}
{% endfor %}</p>
<h3><u>Reagents:</u></h3>
{% for item in sub['reagents'] %}
<p>{{ item['type'] }}: {{ item['lot'] }} (EXP: {{ item['expiry'] }})</p>
{% endfor %}
<p>{% for item in sub['reagents'] %}
{% if loop.index == 1%}
&nbsp;&nbsp;&nbsp;{{ item['type'] }}: {{ item['lot'] }} (EXP: {{ item['expiry'] }})<br>
{% else %}
&nbsp;&nbsp;&nbsp;&nbsp;{{ item['type'] }}: {{ item['lot'] }} (EXP: {{ item['expiry'] }})<br>
{% endif %}
{% endfor %}</p>
<h3><u>Samples:</u></h3>
{% for item in sub['samples'] %}
<p>{{ item['well'] }}: {{ item['name'] }}</p>
{% endfor %}
<p>{% for item in sub['samples'] %}
{% if loop.index == 1 %}
&nbsp;&nbsp;&nbsp;{{ item['well'] }}: {{ item['name'] }}<br>
{% else %}
&nbsp;&nbsp;&nbsp;&nbsp;{{ item['well'] }}: {{ item['name'] }}<br>
{% endif %}
{% endfor %}</p>
{% if sub['controls'] %}
<h3><u>Attached Controls:</u></h3>
{% for item in sub['controls'] %}
<p><b>{{ item['name'] }}:</b> {{ item['type'] }} (Targets: {{ item['targets'] }})</p>
<p>&nbsp;&nbsp;&nbsp;<b>{{ item['name'] }}:</b> {{ item['type'] }} (Targets: {{ item['targets'] }})</p>
{% if item['kraken'] %}
<p>{{ item['name'] }} Top 5 Kraken Results</p>
{% for genera in item['kraken'] %}
<p>{{ genera['name'] }}: {{ genera['kraken_count'] }} ({{ genera['kraken_percent'] }})</p>
{% endfor %}
<p>&nbsp;&nbsp;&nbsp;{{ item['name'] }} Top 5 Kraken Results:</p>
<p>{% for genera in item['kraken'] %}
{% if loop.index == 1 %}
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;{{ genera['name'] }}: {{ genera['kraken_count'] }} ({{ genera['kraken_percent'] }})<br>
{% else %}
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;{{ genera['name'] }}: {{ genera['kraken_count'] }} ({{ genera['kraken_percent'] }})<br>
{% endif %}
{% endfor %}</p>
{% endif %}
{% endfor %}
{% endif %}
{% if sub['ext_info'] %}
<h3><u>Extraction Status:</u></h3>
<p>{% for key, value in sub['ext_info'].items() %}
{% if loop.index == 1%}
&nbsp;&nbsp;&nbsp;{{ key|replace('_', ' ')|title() }}: {{ value }}<br>
{% else %}
{% if "column" in key %}
&nbsp;&nbsp;&nbsp;&nbsp;{{ key|replace('_', ' ')|title() }}: {{ value }}uL<br>
{% else %}
&nbsp;&nbsp;&nbsp;&nbsp;{{ key|replace('_', ' ')|title() }}: {{ value }}<br>
{% endif %}
{% endif %}
{% endfor %}</p>
{% endif %}
</body>
</html>

15
src/submissions/templates/submission_details.txt
View File

@@ -1,16 +1,15 @@
{# template for constructing submission details #}
{% for key, value in sub.items() if key != 'reagents' and key != 'samples' and key != 'controls' %}
{% for key, value in sub.items() if key != 'reagents' and key != 'samples' and key != 'controls' and key != 'ext_info' %}
{% if key=='Cost' %} {{ key }}: {{ "${:,.2f}".format(value) }} {% else %} {{ key }}: {{ value }} {% endif %}
{% endfor %}
Reagents:
{% for item in sub['reagents'] %}
{{ item['type'] }}: {{ item['lot'] }} (EXP: {{ item['expiry'] }})
{% endfor %}
{{ item['type'] }}: {{ item['lot'] }} (EXP: {{ item['expiry'] }}){% endfor %}
Samples:
{% for item in sub['samples'] %}
{{ item['well'] }}: {{ item['name'] }}
{% endfor %}
{{ item['well'] }}: {{ item['name'] }}{% endfor %}
{% if sub['controls'] %}
Attached Controls:
{% for item in sub['controls'] %}
@@ -19,5 +18,9 @@ Attached Controls:
{{ item['name'] }} Top 5 Kraken Results
{% for genera in item['kraken'] %}
{{ genera['name'] }}: {{ genera['kraken_count'] }} ({{ genera['kraken_percent'] }}){% endfor %}{% endif %}
{% endfor %}
{% endfor %}{% endif %}
{% if sub['ext_info'] %}
Extraction Status:
{% for key, value in sub['ext_info'].items() %}
{{ key|replace('_', ' ')|title() }}: {{ value }}{% endfor %}
{% endif %}