Updated controls to both Irida and PCR.

src/submissions/frontend/visualizations/pcr_charts.py

@@ -0,0 +1,34 @@
+"""
+Functions for constructing irida controls graphs using plotly.
+"""
+from datetime import date
+from pprint import pformat
+import plotly
+from . import CustomFigure
+import plotly.express as px
+import pandas as pd
+from PyQt6.QtWidgets import QWidget
+from plotly.graph_objects import Figure
+import logging
+from tools import get_unique_values_in_df_column, divide_chunks
+from frontend.widgets.functions import select_save_file
+
+logger = logging.getLogger(f"submissions.{__name__}")
+
+
+class PCRFigure(CustomFigure):
+
+    def __init__(self, df: pd.DataFrame, modes: list, ytitle: str | None = None, parent: QWidget | None = None,
+                 months: int = 6):
+        super().__init__(df=df, modes=modes)
+        self.construct_chart(df=df)
+        # self.generic_figure_markers(modes=modes, ytitle=ytitle, months=months)
+
+    def construct_chart(self, df: pd.DataFrame):
+        logger.debug(f"PCR df: {df}")
+        try:
+            scatter = px.scatter(data_frame=df, x='submitted_date', y="ct", hover_data=["name", "target", "ct", "reagent_lot"], color='target')
+        except ValueError:
+            scatter = px.scatter()
+        self.add_traces(scatter.data)
+