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Second round of code cleanup.

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This commit is contained in:
lwark
2024-10-30 07:34:39 -05:00
parent 1f83b61c81
commit ba1b3e5cf3
19 changed files with 176 additions and 110 deletions
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11
src/submissions/frontend/visualizations/__init__.py
View File

@@ -2,12 +2,13 @@
Contains all operations for creating charts, graphs and visual effects.
'''
from PyQt6.QtWidgets import QWidget
import plotly
import plotly, logging
from plotly.graph_objects import Figure
from plotly.graph_objs import FigureWidget
import pandas as pd
from frontend.widgets.functions import select_save_file
logger = logging.getLogger(f"submissions.{__name__}")
class CustomFigure(Figure):
@@ -40,16 +41,12 @@ class CustomFigure(Figure):
"""
Creates final html code from plotly
Args:
figure (Figure): input figure
Returns:
str: html string
"""
html = '<html><body>'
if self is not None:
html += plotly.offline.plot(self, output_type='div',
include_plotlyjs='cdn') #, image = 'png', auto_open=True, image_filename='plot_image')
html += plotly.offline.plot(self, output_type='div', include_plotlyjs='cdn')
else:
html += "<h1>No data was retrieved for the given parameters.</h1>"
html += '</body></html>'

18
src/submissions/frontend/visualizations/pcr_charts.py
View File

@@ -2,9 +2,6 @@
Functions for constructing irida controls graphs using plotly.
"""
from pprint import pformat
from plotly.graph_objs import FigureWidget, Scatter
from . import CustomFigure
import plotly.express as px
import pandas as pd
@@ -13,30 +10,23 @@ import logging
logger = logging.getLogger(f"submissions.{__name__}")
# NOTE: For click events try (haven't got working yet) ipywidgets >=7.0.0 required for figurewidgets:
# https://plotly.com/python/click-events/
class PCRFigure(CustomFigure):
def __init__(self, df: pd.DataFrame, modes: list, ytitle: str | None = None, parent: QWidget | None = None,
months: int = 6):
super().__init__(df=df, modes=modes)
logger.debug(f"DF: {self.df}")
# logger.debug(f"DF: {self.df}")
self.construct_chart(df=df)
def hello(self):
print("hello")
def construct_chart(self, df: pd.DataFrame):
logger.debug(f"PCR df:\n {df}")
# logger.debug(f"PCR df:\n {df}")
try:
express = px.scatter(data_frame=df, x='submitted_date', y="ct",
scatter = px.scatter(data_frame=df, x='submitted_date', y="ct",
hover_data=["name", "target", "ct", "reagent_lot"],
color="target")
except ValueError:
express = px.scatter()
scatter = FigureWidget([datum for datum in express.data])
scatter = px.scatter()
self.add_traces(scatter.data)
self.update_traces(marker={'size': 15})