Writer and manager updates.

src/submissions/backend/managers/results/pcr_results_manager.py

@@ -1,32 +1,29 @@
 """
 
 """
+from __future__ import annotations
 import logging
 from pathlib import Path
+from typing import Tuple, List, TYPE_CHECKING
 from backend.db.models import Procedure
 from backend.excel.parsers.results_parsers.pcr_results_parser import PCRSampleParser, PCRInfoParser
 from . import DefaultResultsManager
+if TYPE_CHECKING:
+    from backend.validators.pydant import PydResults
 
 logger = logging.getLogger(f"submissions.{__name__}")
 
 class PCRManager(DefaultResultsManager):
 
-    def __init__(self, procedure: Procedure, parent, fname:Path|str|None=None):
+    def __init__(self, procedure: Procedure, parent, fname: Path | str | None = None):
         super().__init__(procedure=procedure, parent=parent, fname=fname)
+        self.parse()
+
+    def parse(self):
         self.info_parser = PCRInfoParser(filepath=self.fname, procedure=self.procedure)
         self.sample_parser = PCRSampleParser(filepath=self.fname, procedure=self.procedure)
-        self.build_info()
-        self.build_samples()
 
-    def build_info(self):
-        procedure_info = self.info_parser.to_pydantic()
-        procedure_info.results_type = self.__class__.__name__
-        procedure_sql = procedure_info.to_sql()
-        procedure_sql.save()
 
-    def build_samples(self):
-        samples = self.sample_parser.to_pydantic()
-        for sample in samples:
-            sample.results_type = self.__class__.__name__
-            sql = sample.to_sql()
-            sql.save()
+
+
+