Before creating info and reagent parser classes.
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@@ -10,11 +10,10 @@ from PyQt6.QtWidgets import (
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QHBoxLayout
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)
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from PyQt6.QtCore import Qt, QDate, QSize
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from tools import check_not_nan
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from tools import check_not_nan, jinja_template_loading, Settings
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from ..all_window_functions import extract_form_info
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from backend.db import get_all_reagenttype_names, lookup_all_sample_types, create_kit_from_yaml, \
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lookup_regent_by_type_name, lookup_last_used_reagenttype_lot
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from tools import jinja_template_loading
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lookup_regent_by_type_name, lookup_last_used_reagenttype_lot, lookup_all_reagent_names_by_role
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import logging
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import numpy as np
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from .pop_ups import AlertPop
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@@ -28,9 +27,9 @@ class AddReagentForm(QDialog):
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"""
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dialog to add gather info about new reagent
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"""
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def __init__(self, ctx:dict, reagent_lot:str|None, reagent_type:str|None, expiry:date|None=None) -> None:
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def __init__(self, ctx:dict, reagent_lot:str|None, reagent_type:str|None, expiry:date|None=None, reagent_name:str|None=None) -> None:
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super().__init__()
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self.ctx = ctx
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if reagent_lot == None:
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reagent_lot = ""
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@@ -42,21 +41,26 @@ class AddReagentForm(QDialog):
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self.buttonBox.accepted.connect(self.accept)
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self.buttonBox.rejected.connect(self.reject)
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# widget to get lot info
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lot_input = QLineEdit()
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lot_input.setObjectName("lot")
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lot_input.setText(reagent_lot)
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self.name_input = QComboBox()
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self.name_input.setObjectName("name")
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self.name_input.setEditable(True)
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self.name_input.setCurrentText(reagent_name)
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# self.name_input.setText(reagent_name)
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self.lot_input = QLineEdit()
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self.lot_input.setObjectName("lot")
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self.lot_input.setText(reagent_lot)
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# widget to get expiry info
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exp_input = QDateEdit(calendarPopup=True)
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exp_input.setObjectName('expiry')
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self.exp_input = QDateEdit(calendarPopup=True)
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self.exp_input.setObjectName('expiry')
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# if expiry is not passed in from gui, use today
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if expiry == None:
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exp_input.setDate(QDate.currentDate())
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self.exp_input.setDate(QDate.currentDate())
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else:
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exp_input.setDate(expiry)
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self.exp_input.setDate(expiry)
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# widget to get reagent type info
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type_input = QComboBox()
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type_input.setObjectName('type')
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type_input.addItems([item.replace("_", " ").title() for item in get_all_reagenttype_names(ctx=ctx)])
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self.type_input = QComboBox()
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self.type_input.setObjectName('type')
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self.type_input.addItems([item.replace("_", " ").title() for item in get_all_reagenttype_names(ctx=ctx)])
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logger.debug(f"Trying to find index of {reagent_type}")
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# convert input to user friendly string?
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try:
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@@ -64,18 +68,26 @@ class AddReagentForm(QDialog):
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except AttributeError:
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reagent_type = None
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# set parsed reagent type to top of list
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index = type_input.findText(reagent_type, Qt.MatchFlag.MatchEndsWith)
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index = self.type_input.findText(reagent_type, Qt.MatchFlag.MatchEndsWith)
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if index >= 0:
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type_input.setCurrentIndex(index)
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self.type_input.setCurrentIndex(index)
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self.layout = QVBoxLayout()
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self.layout.addWidget(QLabel("Name:"))
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self.layout.addWidget(self.name_input)
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self.layout.addWidget(QLabel("Lot:"))
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self.layout.addWidget(lot_input)
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self.layout.addWidget(self.lot_input)
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self.layout.addWidget(QLabel("Expiry:\n(use exact date on reagent.\nEOL will be calculated from kit automatically)"))
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self.layout.addWidget(exp_input)
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self.layout.addWidget(self.exp_input)
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self.layout.addWidget(QLabel("Type:"))
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self.layout.addWidget(type_input)
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self.layout.addWidget(self.type_input)
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self.layout.addWidget(self.buttonBox)
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self.setLayout(self.layout)
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self.type_input.currentTextChanged.connect(self.update_names)
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def update_names(self):
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logger.debug(self.type_input.currentText())
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self.name_input.clear()
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self.name_input.addItems(item for item in lookup_all_reagent_names_by_role(ctx=self.ctx, role_name=self.type_input.currentText().replace(" ", "_").lower()))
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class ReportDatePicker(QDialog):
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@@ -111,7 +123,7 @@ class KitAdder(QWidget):
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"""
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dialog to get information to add kit
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"""
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def __init__(self, parent_ctx:dict) -> None:
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def __init__(self, parent_ctx:Settings) -> None:
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super().__init__()
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self.ctx = parent_ctx
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self.grid = QGridLayout()
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@@ -196,6 +208,7 @@ class KitAdder(QWidget):
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result = create_kit_from_yaml(ctx=self.ctx, exp=yml_type)
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msg = AlertPop(message=result['message'], status=result['status'])
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msg.exec()
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self.__init__(self.ctx)
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class ReagentTypeForm(QWidget):
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