Before creating info and reagent parser classes.

2023-08-21 13:50:38 -05:00
parent af810ae528
commit b6de159631
20 changed files with 1176 additions and 571 deletions
--- a/alembic/versions/da94eca9d381_polymorpherizing_associations.py
+++ b/alembic/versions/da94eca9d381_polymorpherizing_associations.py
@@ -0,0 +1,56 @@
+"""polymorpherizing associations
+
+Revision ID: da94eca9d381
+Revises: b879020f2a91
+Create Date: 2023-08-03 13:30:34.056316
+
+"""
+from alembic import op
+import sqlalchemy as sa
+from sqlalchemy.dialects import sqlite
+
+# revision identifiers, used by Alembic.
+revision = 'da94eca9d381'
+down_revision = 'b879020f2a91'
+branch_labels = None
+depends_on = None
+
+
+def upgrade() -> None:
+    # ### commands auto generated by Alembic - please adjust! ###
+    with op.batch_alter_table('_samples', schema=None) as batch_op:
+        batch_op.drop_column('ct_n2')
+        batch_op.drop_column('n1_status')
+        batch_op.drop_column('pcr_results')
+        batch_op.drop_column('n2_status')
+        batch_op.drop_column('ct_n1')
+
+    with op.batch_alter_table('_submission_sample', schema=None) as batch_op:
+        batch_op.add_column(sa.Column('base_sub_type', sa.String(), nullable=True))
+        batch_op.add_column(sa.Column('ct_n1', sa.FLOAT(precision=2), nullable=True))
+        batch_op.add_column(sa.Column('ct_n2', sa.FLOAT(precision=2), nullable=True))
+        batch_op.add_column(sa.Column('n1_status', sa.String(length=32), nullable=True))
+        batch_op.add_column(sa.Column('n2_status', sa.String(length=32), nullable=True))
+        batch_op.add_column(sa.Column('pcr_results', sa.JSON(), nullable=True))
+
+    # ### end Alembic commands ###
+
+
+def downgrade() -> None:
+    # ### commands auto generated by Alembic - please adjust! ###
+    with op.batch_alter_table('_submission_sample', schema=None) as batch_op:
+        batch_op.drop_column('pcr_results')
+        batch_op.drop_column('n2_status')
+        batch_op.drop_column('n1_status')
+        batch_op.drop_column('ct_n2')
+        batch_op.drop_column('ct_n1')
+        batch_op.drop_column('base_sub_type')
+
+    with op.batch_alter_table('_samples', schema=None) as batch_op:
+        batch_op.add_column(sa.Column('ct_n1', sa.FLOAT(), nullable=True))
+        batch_op.add_column(sa.Column('n2_status', sa.VARCHAR(length=32), nullable=True))
+        batch_op.add_column(sa.Column('pcr_results', sqlite.JSON(), nullable=True))
+        batch_op.add_column(sa.Column('n1_status', sa.VARCHAR(length=32), nullable=True))
+        batch_op.add_column(sa.Column('ct_n2', sa.FLOAT(), nullable=True))
+
+    # ### end Alembic commands ###