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Before creating info and reagent parser classes.

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Landon Wark
2023-08-21 13:50:38 -05:00
parent af810ae528
commit b6de159631
20 changed files with 1176 additions and 571 deletions
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TODO.md
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@@ -1,13 +1,20 @@
- [ ] Clean up & document code... again.
- Including paring down the logging.debugs
- [ ] Fix Tests... again.
- [ ] Rebuild database
- [ ] Fix Wastewater/Artic double submission problem
- [X] Fix tests.
- [X] Reorganize wastewater artic parser.
- [ ] Streamline addition of new kits by moving as much into DB as possible.
- [X] Large scale refactor (2023-07-24).
- [ ] Provide more generic names for reagenttypes in kits and move specific names to reagents.
- ex. Instead of "omega_e-z_96_disruptor_plate_c_plus" in reagent types, have "omega_plate" and have "omega_e-z_96_disruptor_plate_c_plus" in reagent name.
- Maybe rename to "ReagentRoles"?
- If I'm doing this, since the forms have a different layout for each submission type I should rewrite the parser to use the locations given in database... Which I should do anyway
- [x] Fix Wastewater/Artic double submission problem
- [x] Fix tests.
- [x] Reorganize wastewater artic parser.
- [x] Streamline addition of new kits by moving as much into DB as possible.
- [x] Large scale refactor (2023-07-24).
- [x] Make plate details from html, same as export.
- [x] Put in SN controls I guess.
- [x] Code clean-up and refactor (2023-07).
- [X] Migrate context settings to pydantic-settings model.
- [x] Migrate context settings to pydantic-settings model.
- [x] Insert column into reagent type to indicate if reagent is required for kit.
- Needed to keep interchangeable bead plates from being forced into forms.
- [x] Migrate the parser.sub dictionary to pydantic models.