landon/Submissions-App
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Improved previous sub finding.

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This commit is contained in:
Landon Wark
2024-03-06 15:04:43 -06:00
parent 8b4b39f33e
commit b466cb61d2
14 changed files with 343 additions and 117 deletions
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19
src/submissions/frontend/widgets/gel_checker.py
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@@ -2,7 +2,8 @@
Gel box for artic quality control
"""
from PyQt6.QtWidgets import (QWidget, QDialog, QGridLayout,
QLabel, QLineEdit, QDialogButtonBox
QLabel, QLineEdit, QDialogButtonBox,
QTextEdit
)
import numpy as np
import pyqtgraph as pg
@@ -44,7 +45,8 @@ class GelBox(QDialog):
# creating image view object
self.imv = pg.ImageView()
img = np.array(Image.open(self.img_path).rotate(-90).transpose(Image.FLIP_LEFT_RIGHT))
self.imv.setImage(img)#, xvals=np.linspace(1., 3., data.shape[0]))
self.imv.setImage(img, scale=None)#, xvals=np.linspace(1., 3., data.shape[0]))
layout = QGridLayout()
layout.addWidget(QLabel("DNA Core Submission Number"),0,1)
self.core_number = QLineEdit()
@@ -59,7 +61,7 @@ class GelBox(QDialog):
self.buttonBox = QDialogButtonBox(QBtn)
self.buttonBox.accepted.connect(self.accept)
self.buttonBox.rejected.connect(self.reject)
layout.addWidget(self.buttonBox, 22, 5, 1, 1)#, alignment=Qt.AlignmentFlag.AlignTop)
layout.addWidget(self.buttonBox, 23, 1, 1, 1)#, alignment=Qt.AlignmentFlag.AlignTop)
self.setLayout(layout)
def parse_form(self) -> Tuple[str, str|Path, list]:
@@ -70,14 +72,14 @@ class GelBox(QDialog):
Tuple[str, str|Path, list]: output values
"""
dna_core_submission_number = self.core_number.text()
return dna_core_submission_number, self.img_path, self.form.parse_form()
values, comment = self.form.parse_form()
return dna_core_submission_number, self.img_path, values, comment
class ControlsForm(QWidget):
def __init__(self, parent) -> None:
super().__init__(parent)
self.layout = QGridLayout()
columns = []
rows = []
for iii, item in enumerate(["Negative Control Key", "Description", "Results - 65 C", "Results - 63 C", "Results - Spike"]):
@@ -98,6 +100,11 @@ class ControlsForm(QWidget):
widge.setText("Neg")
widge.setObjectName(f"{rows[iii]} : {columns[jjj]}")
self.layout.addWidget(widge, iii+1, jjj+2, 1, 1)
self.layout.addWidget(QLabel("Comments:"), 0,5,1,1)
self.comment_field = QTextEdit(self)
self.comment_field.setFixedHeight(50)
self.layout.addWidget(self.comment_field, 1,5,4,1)
self.setLayout(self.layout)
def parse_form(self) -> List[dict]:
@@ -118,4 +125,4 @@ class ControlsForm(QWidget):
if label[0] not in [item['name'] for item in output]:
output.append(dicto)
logger.debug(pformat(output))
return output
return output, self.comment_field.toPlainText()