Added ability to not import reagents on first import.

src/submissions/backend/db/models/__init__.py

@@ -25,6 +25,16 @@ logger = logging.getLogger(f"submissions.{__name__}")
 class LogMixin(Base):
     __abstract__ = True
 
+    def truncated_name(self):
+        name = str(self)
+        if len(name) > 64:
+            name = name.replace("<", "").replace(">", "")
+        if len(name) > 64:
+            name = name.replace("agent", "")
+        if len(name) > 64:
+            name = f"...{name[-61:]}"
+        return name
+
 
 class BaseClass(Base):
     """

src/submissions/backend/db/models/controls.py

@@ -539,7 +539,7 @@ class IridaControl(Control):
         except AttributeError:
             consolidate = False
         report = Report()
-        logger.debug(f"settings: {pformat(chart_settings)}")
+        # logger.debug(f"settings: {pformat(chart_settings)}")
         controls = cls.query(subtype=chart_settings['sub_type'], start_date=chart_settings['start_date'],
                              end_date=chart_settings['end_date'])
         # logger.debug(f"Controls found: {controls}")

src/submissions/backend/db/models/kits.py

@@ -427,9 +427,10 @@ class Reagent(BaseClass, LogMixin):
 
     def __repr__(self):
         if self.name:
-            return f"<Reagent({self.name}-{self.lot})>"
+            name = f"<Reagent({self.name}-{self.lot})>"
         else:
-            return f"<Reagent({self.role.name}-{self.lot})>"
+            name = f"<Reagent({self.role.name}-{self.lot})>"
+        return name
 
     def to_sub_dict(self, extraction_kit: KitType = None, full_data: bool = False, **kwargs) -> dict:
         """
@@ -1347,7 +1348,7 @@ class SubmissionReagentAssociation(BaseClass):
         return PydReagent(**self.to_sub_dict(extraction_kit=extraction_kit))
 
 
-class Equipment(BaseClass):
+class Equipment(BaseClass, LogMixin):
     """
     A concrete instance of equipment
     """
@@ -1851,7 +1852,7 @@ class TipRole(BaseClass):
         super().save()
 
 
-class Tips(BaseClass):
+class Tips(BaseClass, LogMixin):
     """
     A concrete instance of tips.
     """

src/submissions/backend/db/models/submissions.py

@@ -174,7 +174,8 @@ class BasicSubmission(BaseClass, LogMixin):
                             'platemap', 'export_map', 'equipment', 'tips', 'custom'],
             # NOTE: Fields not placed in ui form
             form_ignore=['reagents', 'ctx', 'id', 'cost', 'extraction_info', 'signed_by', 'comment', 'namer',
-                         'submission_object', "tips", 'contact_phone', 'custom', 'cost_centre'] + recover,
+                         'submission_object', "tips", 'contact_phone', 'custom', 'cost_centre', 'completed_date',
+                         'controls'] + recover,
             # NOTE: Fields not placed in ui form to be moved to pydantic
             form_recover=recover
         ))