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Generic info fields input into 'custom'.

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This commit is contained in:
lwark
2024-09-24 15:23:51 -05:00
parent 7bc356e205
commit b0e9f9996d
13 changed files with 898 additions and 12 deletions
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20
src/submissions/backend/excel/parser.py
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@@ -65,20 +65,28 @@ class SheetParser(object):
"""
parser = InfoParser(xl=self.xl, submission_type=self.submission_type, sub_object=self.sub_object)
info = parser.parse_info()
logger.debug(f"Checking old submission type: {self.submission_type.name} against new: {info['submission_type']['value']}")
if self.submission_type.name != info['submission_type']['value']:
if info['submission_type']['value'] not in [None, "None", "", " "]:
self.submission_type = SubmissionType.query(name=info['submission_type']['value'])
logger.debug(f"Updated self.submission_type to {self.submission_type}. Rerunning parse.")
self.parse_info()
return
self.info_map = parser.map
for k, v in info.items():
match k:
# NOTE: exclude samples.
case "sample":
continue
case "submission_type":
self.sub[k] = v
# NOTE: Rescue submission type using scraped values to be used in Sample, Reagents, etc.
if v not in [None, "None", "", " "]:
self.submission_type = SubmissionType.query(name=v)
logger.debug(f"Updated self.submission_type to {self.submission_type}")
# case "submission_type":
# self.sub[k] = v
# # NOTE: Rescue submission type using scraped values to be used in Sample, Reagents, etc.
# if v not in [None, "None", "", " "]:
# self.submission_type = SubmissionType.query(name=v)
# logger.debug(f"Updated self.submission_type to {self.submission_type}")
case _:
self.sub[k] = v
print(f"\n\n {self.sub} \n\n")
def parse_reagents(self, extraction_kit: str | None = None):