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Start of custom context menu for procedure creation

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lwark
2025-05-29 14:13:16 -05:00
parent fef964fba0
commit a2e1c52f22
6 changed files with 179 additions and 58 deletions
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11
src/submissions/backend/db/models/submissions.py
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@@ -1297,7 +1297,7 @@ class Run(BaseClass, LogMixin):
submission_rank = self.get_submission_rank_of_sample(sample=sample)
if submission_rank != 0:
row, column = plate_dict[submission_rank]
ranked_samples.append(dict(sample_id=sample.sample_id, row=row, column=column, submission_rank=submission_rank, background_color="#6ffe1d"))
ranked_samples.append(dict(well_id=sample.sample_id, sample_id=sample.sample_id, row=row, column=column, submission_rank=submission_rank, background_color="#6ffe1d"))
else:
unranked_samples.append(sample)
possible_ranks = (item for item in list(plate_dict.keys()) if item not in [sample['submission_rank'] for sample in ranked_samples])
@@ -1310,21 +1310,18 @@ class Run(BaseClass, LogMixin):
continue
row, column = plate_dict[submission_rank]
ranked_samples.append(
dict(sample_id=sample.sample_id, row=row, column=column, submission_rank=submission_rank,
dict(well_id=sample.sample_id, sample_id=sample.sample_id, row=row, column=column, submission_rank=submission_rank,
background_color="#6ffe1d"))
padded_list = []
for iii in range(1, proceduretype.total_wells+1):
sample = next((item for item in ranked_samples if item['submission_rank']==iii),
dict(sample_id="", row=0, column=0, submission_rank=iii)
dict(well_id=f"blank_{iii}", sample_id="", row=0, column=0, submission_rank=iii, background_color="#ffffff")
)
padded_list.append(sample)
logger.debug(f"Final padded list:\n{pformat(list(sorted(padded_list, key=itemgetter('submission_rank'))))}")
# logger.debug(f"Final padded list:\n{pformat(list(sorted(padded_list, key=itemgetter('submission_rank'))))}")
return list(sorted(padded_list, key=itemgetter('submission_rank')))
class SampleType(BaseClass):
id = Column(INTEGER, primary_key=True) #: primary key
name = Column(String(64), nullable=False, unique=True) #: identification from submitter