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added kraken data to details.

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This commit is contained in:
Landon Wark
2023-02-06 13:39:35 -06:00
parent 7fb5bb12f3
commit 963ac7d4a4
11 changed files with 177 additions and 24 deletions
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32
src/submissions/templates/submission_details.html Normal file
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@@ -0,0 +1,32 @@
<!doctype html>
<html>
<head>
<title>Submission Details for {{ sub['Plate Number'] }}</title>
</head>
<body>
<h2><u>Submission Details for {{ sub['Plate Number'] }}</u></h2>
{% for key, value in sub.items() if key != 'reagents' and key != 'samples' and key != 'controls' %}
{% if key=='Cost' %} <p>{{ key }}: {{ "${:,.2f}".format(value) }}</p> {% else %} <p>{{ key }}: {{ value }}</p> {% endif %}
{% endfor %}
<h3><u>Reagents:</u></h3>
{% for item in sub['reagents'] %}
<p>{{ item['type'] }}: {{ item['lot'] }} (EXP: {{ item['expiry'] }})</p>
{% endfor %}
<h3><u>Samples:</u></h3>
{% for item in sub['samples'] %}
<p>{{ item['well'] }}: {{ item['name'] }}</p>
{% endfor %}
{% if sub['controls'] %}
<h3><u>Attached Controls:</u></h3>
{% for item in sub['controls'] %}
<p><b>{{ item['name'] }}:</b> {{ item['type'] }} (Targets: {{ item['targets'] }})</p>
{% if item['kraken'] %}
<p>{{ item['name'] }} Top 5 Kraken Results</p>
{% for genera in item['kraken'] %}
<p>{{ genera['name'] }}: {{ genera['kraken_count'] }} ({{ genera['kraken_percent'] }})</p>
{% endfor %}
{% endif %}
{% endfor %}
{% endif %}
</body>
</html>

14
src/submissions/templates/submission_details.txt
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@@ -1,6 +1,6 @@
{# template for constructing submission details #}
{% for key, value in sub.items() if key != 'reagents' and key != 'samples' %}
{% for key, value in sub.items() if key != 'reagents' and key != 'samples' and key != 'controls' %}
{% if key=='Cost' %} {{ key }}: {{ "${:,.2f}".format(value) }} {% else %} {{ key }}: {{ value }} {% endif %}
{% endfor %}
Reagents:
@@ -10,4 +10,14 @@ Reagents:
Samples:
{% for item in sub['samples'] %}
{{ item['well'] }}: {{ item['name'] }}
{% endfor %}
{% endfor %}
{% if sub['controls'] %}
Attached Controls:
{% for item in sub['controls'] %}
{{ item['name'] }}: {{ item['type'] }} (Targets: {{ item['targets'] }})
{% if item['kraken'] %}
{{ item['name'] }} Top 5 Kraken Results
{% for genera in item['kraken'] %}
{{ genera['name'] }}: {{ genera['kraken_count'] }} ({{ genera['kraken_percent'] }}){% endfor %}{% endif %}
{% endfor %}
{% endif %}