Pydantic switchover debugging.
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@@ -460,6 +460,7 @@ class BasicSubmission(BaseClass, LogMixin):
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"""
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rows = range(1, plate_rows + 1)
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columns = range(1, plate_columns + 1)
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logger.debug(f"sample list for plate map: {pformat(sample_list)}")
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# NOTE: An overly complicated list comprehension create a list of sample locations
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# NOTE: next will return a blank cell if no value found for row/column
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output_samples = [next((item for item in sample_list if item['row'] == row and item['column'] == column),
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@@ -1536,6 +1537,7 @@ class Wastewater(BasicSubmission):
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continue
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thing['tooltip'] = f"Sample Name: {thing['name']}\nWell: {thing['sample_location']}"
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dummy_samples.append(thing)
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logger.debug(f"Dummy samples for 24 well: {pformat(dummy_samples)}")
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output['origin_plate'] = self.__class__.make_plate_map(sample_list=dummy_samples, plate_rows=4,
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plate_columns=6)
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# logger.debug(f"PCR info: {output['pcr_info']}")
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