Pydantic switchover debugging.

This commit is contained in:
lwark
2025-03-07 10:19:12 -06:00
parent abcdbac5b8
commit 919376c1ce
7 changed files with 1327 additions and 9 deletions

View File

@@ -52,7 +52,12 @@ def import_irida(ctx: Settings):
sample = new_session.query(BasicSample).filter(BasicSample.submitter_id == instance.name).first()
if sample:
instance.sample = sample
instance.submission = sample.submissions[0]
try:
instance.submission = sample.submissions[0]
except IndexError:
logger.error(f"Could not get sample for {sample}")
instance.submission = None
# instance.submission = sample.submission[0]
new_session.add(instance)
new_session.commit()
new_session.close()