Pydantic switchover debugging.
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@@ -52,7 +52,12 @@ def import_irida(ctx: Settings):
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sample = new_session.query(BasicSample).filter(BasicSample.submitter_id == instance.name).first()
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if sample:
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instance.sample = sample
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instance.submission = sample.submissions[0]
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try:
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instance.submission = sample.submissions[0]
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except IndexError:
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logger.error(f"Could not get sample for {sample}")
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instance.submission = None
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# instance.submission = sample.submission[0]
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new_session.add(instance)
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new_session.commit()
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new_session.close()
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