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Updated parser functions to include identifiers.

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lwark
2025-06-11 13:18:01 -05:00
parent 592073c2a1
commit 90dc97683f
7 changed files with 254 additions and 25 deletions
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6
src/submissions/frontend/widgets/submission_widget.py
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@@ -10,7 +10,7 @@ from .functions import select_open_file, select_save_file
import logging
from pathlib import Path
from tools import Report, Result, check_not_nan, main_form_style, report_result, get_application_from_parent
from backend.excel import ClientSubmissionParser, SampleParser
from backend.excel import ClientSubmissionParser, ClientSampleParser
from backend.validators import PydSubmission, PydReagent, PydClientSubmission, PydSample
from backend.db import (
ClientLab, SubmissionType, Reagent,
@@ -129,12 +129,12 @@ class SubmissionFormContainer(QWidget):
self.clientsubmissionparser = ClientSubmissionParser(filepath=fname)
try:
# self.prsr = SheetParser(filepath=fname)
self.sampleparser = SampleParser(filepath=fname)
self.sampleparser = ClientSampleParser(filepath=fname)
except PermissionError:
logger.error(f"Couldn't get permission to access file: {fname}")
return
except AttributeError:
self.sampleparser = SampleParser(filepath=fname)
self.sampleparser = ClientSampleParser(filepath=fname)
self.pydclientsubmission = self.clientsubmissionparser.to_pydantic()
self.pydsamples = self.sampleparser.to_pydantic()
# logger.debug(f"Samples: {pformat(self.pydclientsubmission.sample)}")