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Updated kit creation.

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This commit is contained in:
Landon Wark
2023-05-04 14:31:02 -05:00
parent 06447f0938
commit 8a95e3a4c5
5 changed files with 37 additions and 16 deletions
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13
src/submissions/backend/db/functions.py
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@@ -477,7 +477,12 @@ def create_kit_from_yaml(ctx:dict, exp:dict) -> dict:
continue
# A submission type may use multiple kits.
for kt in exp[type]['kits']:
kit = models.KitType(name=kt, used_for=[type.replace("_", " ").title()], constant_cost=exp[type]["kits"][kt]["constant_cost"], mutable_cost_column=exp[type]["kits"][kt]["mutable_cost_column"])
kit = models.KitType(name=kt,
used_for=[type.replace("_", " ").title()],
constant_cost=exp[type]["kits"][kt]["constant_cost"],
mutable_cost_column=exp[type]["kits"][kt]["mutable_cost_column"],
mutable_cost_sample=exp[type]["kits"][kt]["mutable_cost_sample"]
)
# A kit contains multiple reagent types.
for r in exp[type]['kits'][kt]['reagenttypes']:
# check if reagent type already exists.
@@ -488,7 +493,11 @@ def create_kit_from_yaml(ctx:dict, exp:dict) -> dict:
rt = look_up
rt.kits.append(kit)
# add this because I think it's necessary to get proper back population
kit.reagent_types_id.append(rt.id)
try:
kit.reagent_types_id.append(rt.id)
except AttributeError as e:
logger.error(f"Error appending reagent id to kit.reagent_types_id: {e}, creating new.")
# kit.reagent_types_id = [rt.id]
ctx['database_session'].add(rt)
logger.debug(f"Kit construction reagent type: {rt.__dict__}")
logger.debug(f"Kit construction kit: {kit.__dict__}")