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Moments before disaster.

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This commit is contained in:
lwark
2024-12-06 12:02:39 -06:00
parent 5fc02ffeec
commit 80527355d1
23 changed files with 157 additions and 325 deletions
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31
src/submissions/frontend/widgets/submission_widget.py
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@@ -1,15 +1,13 @@
'''
Contains all submission related frontend functions
'''
import sys
from PyQt6.QtWidgets import (
QWidget, QPushButton, QVBoxLayout,
QComboBox, QDateEdit, QLineEdit, QLabel
)
from PyQt6.QtCore import pyqtSignal, Qt
from . import select_open_file, select_save_file
import logging, difflib
import logging
from pathlib import Path
from tools import Report, Result, check_not_nan, main_form_style, report_result
from backend.excel.parser import SheetParser
@@ -187,6 +185,8 @@ class SubmissionFormContainer(QWidget):
class SubmissionFormWidget(QWidget):
update_reagent_fields = ['extraction_kit']
def __init__(self, parent: QWidget, submission: PydSubmission, disable: list | None = None) -> None:
super().__init__(parent)
# logger.debug(f"Disable: {disable}")
@@ -203,7 +203,7 @@ class SubmissionFormWidget(QWidget):
# logger.debug(f"Attempting to extend ignore list with {self.pyd.submission_type['value']}")
self.layout = QVBoxLayout()
for k in list(self.pyd.model_fields.keys()) + list(self.pyd.model_extra.keys()):
logger.debug(f"Creating widget: {k}")
# logger.debug(f"Creating widget: {k}")
if k in self.ignore:
logger.warning(f"{k} in form_ignore {self.ignore}, not creating widget")
continue
@@ -225,10 +225,10 @@ class SubmissionFormWidget(QWidget):
sub_obj=st, disable=check)
if add_widget is not None:
self.layout.addWidget(add_widget)
if k == "extraction_kit":
# if k == "extraction_kit":
if k in self.__class__.update_reagent_fields:
add_widget.input.currentTextChanged.connect(self.scrape_reagents)
self.setStyleSheet(main_form_style)
# self.scrape_reagents(self.pyd.extraction_kit)
self.scrape_reagents(self.extraction_kit)
def create_widget(self, key: str, value: dict | PydReagent, submission_type: str | SubmissionType | None = None,
@@ -293,9 +293,8 @@ class SubmissionFormWidget(QWidget):
if isinstance(reagent, self.ReagentFormWidget) or isinstance(reagent, QPushButton):
reagent.setParent(None)
reagents, integrity_report = self.pyd.check_kit_integrity(extraction_kit=self.extraction_kit)
logger.debug(f"Got reagents: {pformat(reagents)}")
# logger.debug(f"Got reagents: {pformat(reagents)}")
for reagent in reagents:
# add_widget = self.ReagentFormWidget(parent=self, reagent=reagent, extraction_kit=self.pyd.extraction_kit)
add_widget = self.ReagentFormWidget(parent=self, reagent=reagent, extraction_kit=self.extraction_kit)
self.layout.addWidget(add_widget)
report.add_result(integrity_report)
@@ -334,10 +333,6 @@ class SubmissionFormWidget(QWidget):
query = [widget for widget in query if widget.objectName() == object_name]
return query
# def update_pyd(self):
# results = self.parse_form()
# logger.debug(pformat(results))
@report_result
def submit_new_sample_function(self, *args) -> Report:
"""
@@ -538,19 +533,14 @@ class SubmissionFormWidget(QWidget):
except (TypeError, KeyError):
pass
obj = parent.parent().parent()
logger.debug(f"Object: {obj}")
logger.debug(f"Parent: {parent.parent()}")
# logger.debug(f"Object: {obj}")
# logger.debug(f"Parent: {parent.parent()}")
# logger.debug(f"Creating widget for: {key}")
match key:
case 'submitting_lab':
add_widget = MyQComboBox(scrollWidget=parent)
# NOTE: lookup organizations suitable for submitting_lab (ctx: self.InfoItem.SubmissionFormWidget.SubmissionFormContainer.AddSubForm )
labs = [item.name for item in Organization.query()]
# NOTE: try to set closest match to top of list
# try:
# labs = difflib.get_close_matches(value, labs, len(labs), 0)
# except (TypeError, ValueError):
# pass
if isinstance(value, dict):
value = value['value']
if isinstance(value, Organization):
@@ -559,7 +549,7 @@ class SubmissionFormWidget(QWidget):
looked_up_lab = Organization.query(name=value, limit=1)
except AttributeError:
looked_up_lab = None
logger.debug(f"\n\nLooked up lab: {looked_up_lab}")
# logger.debug(f"\n\nLooked up lab: {looked_up_lab}")
if looked_up_lab:
try:
labs.remove(str(looked_up_lab.name))
@@ -579,7 +569,6 @@ class SubmissionFormWidget(QWidget):
add_widget = MyQComboBox(scrollWidget=parent)
# NOTE: lookup existing kits by 'submission_type' decided on by sheetparser
# logger.debug(f"Looking up kits used for {submission_type}")
# uses = [item.name for item in KitType.query(used_for=submission_type)]
uses = [item.name for item in submission_type.kit_types]
obj.uses = uses
# logger.debug(f"Kits received for {submission_type}: {uses}")