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Better xlsx reports

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This commit is contained in:
Landon Wark
2023-02-03 14:18:29 -06:00
parent d2c820f03a
commit 7fb5bb12f3
5 changed files with 44 additions and 14 deletions
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19
src/submissions/backend/db/__init__.py
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@@ -2,16 +2,14 @@ from . import models
import pandas as pd
import sqlalchemy.exc
import sqlite3
# from sqlalchemy.exc import IntegrityError, OperationalError
# from sqlite3 import IntegrityError, OperationalError
import logging
from datetime import date, datetime, timedelta
from sqlalchemy import and_
import uuid
import base64
# import base64
from sqlalchemy import JSON
import json
from dateutil.relativedelta import relativedelta
# from dateutil.relativedelta import relativedelta
from getpass import getuser
logger = logging.getLogger(f"submissions.{__name__}")
@@ -94,11 +92,14 @@ def construct_submission_info(ctx:dict, info_dict:dict) -> models.BasicSubmissio
instance = ctx['database_session'].query(models.BasicSubmission).filter(models.BasicSubmission.rsl_plate_num==info_dict['rsl_plate_num']).first()
msg = "This submission already exists.\nWould you like to overwrite?"
# get model based on submission type converted above
logger.debug(f"Looking at models for submission type: {query}")
model = getattr(models, query)
logger.debug(f"We've got the model: {type(model)}")
info_dict['submission_type'] = info_dict['submission_type'].replace(" ", "_").lower()
# if query return nothing, ie doesn't already exist in db
if instance == None:
instance = model()
logger.debug(f"Submission doesn't exist yet, creating new instance: {instance}")
msg = None
for item in info_dict:
logger.debug(f"Setting {item} to {info_dict[item]}")
@@ -133,11 +134,11 @@ def construct_submission_info(ctx:dict, info_dict:dict) -> models.BasicSubmissio
logger.debug(f"Could not set attribute: {item} to {info_dict[item]}")
continue
# calculate cost of the run: immutable cost + mutable times number of columns
try:
instance.run_cost = instance.extraction_kit.immutable_cost + (instance.extraction_kit.mutable_cost * ((instance.sample_count / 8)/12))
except TypeError:
logger.debug(f"Looks like that kit doesn't have cost breakdown yet, using full plate cost.")
instance.run_cost = instance.extraction_kit.cost_per_run
try:
instance.run_cost = instance.extraction_kit.immutable_cost + (instance.extraction_kit.mutable_cost * ((instance.sample_count / 8)/12))
except (TypeError, AttributeError):
logger.debug(f"Looks like that kit doesn't have cost breakdown yet, using full plate cost.")
instance.run_cost = instance.extraction_kit.cost_per_run
logger.debug(f"Constructed instance: {instance.to_string()}")
logger.debug(msg)
return instance, {'message':msg}