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Pre-fixing JSON update bug.

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This commit is contained in:
Landon Wark
2024-04-15 08:12:36 -05:00
parent f994f81d11
commit 7c46578d21
9 changed files with 90 additions and 40 deletions
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5
src/submissions/backend/validators/pydant.py
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@@ -192,7 +192,7 @@ class PydSample(BaseModel, extra='allow'):
row=row, column=column, id=id)
# logger.debug(f"Using submission_sample_association: {association}")
try:
instance.sample_submission_associations.append(association)
# instance.sample_submission_associations.append(association)
out_associations.append(association)
except IntegrityError as e:
logger.error(f"Could not attach submission sample association due to: {e}")
@@ -809,7 +809,8 @@ class PydSubmission(BaseModel, extra='allow'):
# # what reagent types are in both lists?
# missing = list(set(ext_kit_rtypes).difference(reagenttypes))
missing = []
output_reagents = self.reagents
# output_reagents = self.reagents
output_reagents = ext_kit_rtypes
logger.debug(f"Already have these reagent types: {reagenttypes}")
for rt in ext_kit_rtypes:
if rt.type not in reagenttypes: