Bug fixes.
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@@ -103,11 +103,11 @@ class RSLNamer(object):
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regex (str): string to construct pattern
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filename (str): string to be parsed
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"""
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logger.debug(f"Input string to be parsed: {filename}")
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logger.info(f"Input string to be parsed: {filename}")
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if regex is None:
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regex = BasicSubmission.construct_regex()
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else:
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logger.debug(f"Incoming regex: {regex}")
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# logger.debug(f"Incoming regex: {regex}")
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try:
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regex = re.compile(rf'{regex}', re.IGNORECASE | re.VERBOSE)
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except re.error as e:
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@@ -334,15 +334,20 @@ class PydEquipment(BaseModel, extra='ignore'):
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Tuple[Equipment, SubmissionEquipmentAssociation]: SQL objects
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"""
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if isinstance(submission, str):
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logger.info(f"Got string, querying {submission}")
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submission = BasicSubmission.query(rsl_number=submission)
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equipment = Equipment.query(asset_number=self.asset_number)
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if equipment is None:
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logger.error("No equipment found. Returning None.")
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return
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if submission is not None:
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# NOTE: Need to make sure the same association is not added to the submission
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assoc = SubmissionEquipmentAssociation.query(equipment_id=equipment.id, submission_id=submission.id,
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try:
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assoc = SubmissionEquipmentAssociation.query(equipment_id=equipment.id, submission_id=submission.id,
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role=self.role, limit=1)
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except TypeError as e:
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logger.error(f"Couldn't get association due to {e}, returning...")
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return equipment, None
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if assoc is None:
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assoc = SubmissionEquipmentAssociation(submission=submission, equipment=equipment)
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process = Process.query(name=self.processes[0])
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@@ -351,8 +356,10 @@ class PydEquipment(BaseModel, extra='ignore'):
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assoc.process = process
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assoc.role = self.role
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else:
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logger.warning(f"Found already existing association: {assoc}")
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assoc = None
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else:
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logger.warning(f"No submission found")
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assoc = None
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return equipment, assoc
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@@ -608,7 +615,7 @@ class PydSubmission(BaseModel, extra='allow'):
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@field_validator("contact")
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@classmethod
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def get_contact_from_org(cls, value, values):
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logger.debug(f"Checking on value: {value}")
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# logger.debug(f"Checking on value: {value}")
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match value:
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case dict():
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if isinstance(value['value'], tuple):
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@@ -621,7 +628,7 @@ class PydSubmission(BaseModel, extra='allow'):
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if check is None:
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org = Organization.query(name=values.data['submitting_lab']['value'])
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contact = org.contacts[0].name
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logger.debug(f"Pulled: {contact}")
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# logger.debug(f"Pulled: {contact}")
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if isinstance(contact, tuple):
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contact = contact[0]
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return dict(value=contact, missing=True)
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@@ -758,7 +765,7 @@ class PydSubmission(BaseModel, extra='allow'):
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for tips in self.tips:
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if tips is None:
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continue
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logger.debug(f"Converting tips: {tips} to sql.")
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# logger.debug(f"Converting tips: {tips} to sql.")
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try:
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association = tips.to_sql(submission=instance)
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except AttributeError:
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