Removed logger.debugs for proven functions.

src/submissions/backend/excel/reports.py

@@ -32,7 +32,6 @@ class ReportArchetype(object):
         filename = filename.absolute()
         self.writer = ExcelWriter(filename.with_suffix(".xlsx"), engine='openpyxl')
         self.df.to_excel(self.writer, sheet_name=self.sheet_name)
-        # logger.debug(f"Writing report to: {filename}")
         self.writer.close()
 
 
@@ -43,7 +42,6 @@ class ReportMaker(object):
         self.end_date = end_date
         # NOTE: Set page size to zero to override limiting query size.
         self.subs = BasicSubmission.query(start_date=start_date, end_date=end_date, page_size=0)
-        # logger.debug(f"Number of subs returned: {len(self.subs)}")
         if organizations is not None:
             self.subs = [sub for sub in self.subs if sub.submitting_lab.name in organizations]
         self.detailed_df, self.summary_df = self.make_report_xlsx()
@@ -65,10 +63,8 @@ class ReportMaker(object):
         df2 = df.groupby(["submitting_lab", "extraction_kit"]).agg(
             {'extraction_kit': 'count', 'cost': 'sum', 'sample_count': 'sum'})
         df2 = df2.rename(columns={"extraction_kit": 'run_count'})
-        # logger.debug(f"Output daftaframe for xlsx: {df2.columns}")
         df = df.drop('id', axis=1)
         df = df.sort_values(['submitting_lab', "submitted_date"])
-        # logger.debug(f"Details dataframe:\n{df2}")
         return df, df2
 
     def make_report_html(self, df: DataFrame) -> str:
@@ -86,12 +82,8 @@ class ReportMaker(object):
         """
         old_lab = ""
         output = []
-        # logger.debug(f"Report DataFrame: {df}")
         for row in df.iterrows():
-            # logger.debug(f"Row {ii}: {row}")
             lab = row[0][0]
-            # logger.debug(f"Old lab: {old_lab}, Current lab: {lab}")
-            # logger.debug(f"Name: {row[0][1]}")
             data = [item for item in row[1]]
             kit = dict(name=row[0][1], cost=data[1], run_count=int(data[0]), sample_count=int(data[2]))
             # NOTE: if this is the same lab as before add together
@@ -106,7 +98,6 @@ class ReportMaker(object):
                              total_runs=kit['run_count'])
                 output.append(adder)
             old_lab = lab
-        # logger.debug(output)
         dicto = {'start_date': self.start_date, 'end_date': self.end_date, 'labs': output}
         temp = env.get_template('summary_report.html')
         html = temp.render(input=dicto)
@@ -127,14 +118,12 @@ class ReportMaker(object):
         self.summary_df.to_excel(self.writer, sheet_name="Report")
         self.detailed_df.to_excel(self.writer, sheet_name="Details", index=False)
         self.fix_up_xl()
-        # logger.debug(f"Writing report to: {filename}")
         self.writer.close()
 
     def fix_up_xl(self):
         """
         Handles formatting of xl file, mediocrely.
         """
-        # logger.debug(f"Updating worksheet")
         worksheet: Worksheet = self.writer.sheets['Report']
         for idx, col in enumerate(self.summary_df, start=1):  # NOTE: loop through all columns
             series = self.summary_df[col]
@@ -149,7 +138,6 @@ class ReportMaker(object):
             except ValueError as e:
                 logger.error(f"Couldn't resize column {col} due to {e}")
         blank_row = get_first_blank_df_row(self.summary_df) + 1
-        # logger.debug(f"Blank row index = {blank_row}")
         for col in range(3, 6):
             col_letter = row_map[col]
             worksheet.cell(row=blank_row, column=col, value=f"=SUM({col_letter}2:{col_letter}{str(blank_row - 1)})")