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Prior to moving settings to pydantic-settings

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This commit is contained in:
Landon Wark
2023-07-24 09:17:09 -05:00
parent f6e270f52d
commit 63308674c6
7 changed files with 85 additions and 86 deletions
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18
src/submissions/frontend/main_window_functions.py
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@@ -816,7 +816,7 @@ def import_pcr_results_function(obj:QMainWindow) -> Tuple[QMainWindow, dict]:
def autofill_excel(obj:QMainWindow, xl_map:dict, reagents:List[dict], missing_reagents:List[str], info:dict):
"""
Automatically fills in excel cells with reagent info.
Automatically fills in excel cells with submission info.
Args:
obj (QMainWindow): Original main app window
@@ -829,13 +829,15 @@ def autofill_excel(obj:QMainWindow, xl_map:dict, reagents:List[dict], missing_re
logger.debug(f"Here is the info dict coming in:\n{pprint.pformat(info)}")
logger.debug(f"Here are the missing reagents:\n{missing_reagents}")
# pare down the xl map to only the missing data.
relevant_map = {k:v for k,v in xl_map.items() if k in missing_reagents}
# logger.debug(relevant_map)
# pare down reagents to only what's missing
relevant_reagents = [item for item in reagents if item['type'] in missing_reagents]
# hacky manipulation of submission type so it looks better.
info['submission_type'] = info['submission_type'].replace("_", " ").title()
# pare down info to just what's missing
relevant_info = {k:v for k,v in info.items() if k in missing_reagents}
logger.debug(f"Here is the relevant info: {pprint.pformat(relevant_info)}")
# logger.debug(f"Relevant reagents:\n{relevant_reagents}")
# construct new objects to put into excel sheets:
new_reagents = []
for reagent in relevant_reagents:
@@ -846,12 +848,14 @@ def autofill_excel(obj:QMainWindow, xl_map:dict, reagents:List[dict], missing_re
new_reagent['expiry'] = relevant_map[new_reagent['type']]['expiry']
new_reagent['expiry']['value'] = reagent['expiry']
new_reagent['sheet'] = relevant_map[new_reagent['type']]['sheet']
# name is only present for Bacterial Culture
try:
new_reagent['name'] = relevant_map[new_reagent['type']]['name']
new_reagent['name']['value'] = reagent['type']
except:
pass
new_reagents.append(new_reagent)
# construct new info objects to put into excel sheets
new_info = []
for item in relevant_info:
new_item = {}
@@ -860,11 +864,15 @@ def autofill_excel(obj:QMainWindow, xl_map:dict, reagents:List[dict], missing_re
new_item['value'] = relevant_info[item]
new_info.append(new_item)
logger.debug(f"New reagents: {new_reagents}")
# open the workbook using openpyxl
workbook = load_workbook(obj.xl)
# get list of sheet names
sheets = workbook.sheetnames
logger.debug(workbook.sheetnames)
# logger.debug(workbook.sheetnames)
for sheet in sheets:
# open sheet
worksheet=workbook[sheet]
# Get relevant reagents for that sheet
sheet_reagents = [item for item in new_reagents if sheet in item['sheet']]
for reagent in sheet_reagents:
logger.debug(f"Attempting: {reagent['type']}:")
@@ -874,10 +882,12 @@ def autofill_excel(obj:QMainWindow, xl_map:dict, reagents:List[dict], missing_re
worksheet.cell(row=reagent['name']['row'], column=reagent['name']['column'], value=reagent['name']['value'].replace("_", " ").upper())
except:
pass
# Get relevant info for that sheet
sheet_info = [item for item in new_info if sheet in item['location']['sheets']]
for item in sheet_info:
logger.debug(f"Attempting: {item['type']}")
worksheet.cell(row=item['location']['row'], column=item['location']['column'], value=item['value'])
# Hacky way to
if info['submission_type'] == "Bacterial Culture":
workbook["Sample List"].cell(row=14, column=2, value=getuser())
fname = select_save_file(obj=obj, default_name=info['rsl_plate_num'], extension="xlsx")