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Added report tab with HTML and excel export.

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This commit is contained in:
lwark
2024-10-04 15:24:00 -05:00
parent c89ec2b62c
commit 5fe5c22222
5 changed files with 106 additions and 88 deletions
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95
src/submissions/frontend/widgets/submission_table.py
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@@ -7,9 +7,9 @@ from PyQt6.QtWidgets import QTableView, QMenu
from PyQt6.QtCore import Qt, QAbstractTableModel, QSortFilterProxyModel
from PyQt6.QtGui import QAction, QCursor
from backend.db.models import BasicSubmission
from backend.excel import ReportMaker
from tools import Report, Result, report_result
from .functions import select_save_file, select_open_file
from .functions import select_open_file
# from .misc import ReportDatePicker
logger = logging.getLogger(f"submissions.{__name__}")
@@ -20,6 +20,7 @@ class pandasModel(QAbstractTableModel):
pandas model for inserting summary sheet into gui
NOTE: Copied from Stack Overflow. I have no idea how it actually works.
"""
def __init__(self, data) -> None:
QAbstractTableModel.__init__(self)
self._data = data
@@ -45,10 +46,10 @@ class pandasModel(QAbstractTableModel):
Returns:
int: number of columns in data
"""
"""
return self._data.shape[1]
def data(self, index, role=Qt.ItemDataRole.DisplayRole) -> str|None:
def data(self, index, role=Qt.ItemDataRole.DisplayRole) -> str | None:
if index.isValid():
if role == Qt.ItemDataRole.DisplayRole:
return str(self._data.iloc[index.row(), index.column()])
@@ -63,28 +64,30 @@ class pandasModel(QAbstractTableModel):
class SubmissionsSheet(QTableView):
"""
presents submission summary to user in tab1
"""
"""
def __init__(self, parent) -> None:
"""
initialize
Args:
ctx (dict): settings passed from gui
"""
"""
super().__init__(parent)
self.app = self.parent()
self.report = Report()
self.setData()
self.setData(page=1, page_size=self.app.page_size)
self.resizeColumnsToContents()
self.resizeRowsToContents()
self.setSortingEnabled(True)
self.doubleClicked.connect(lambda x: BasicSubmission.query(id=x.sibling(x.row(), 0).data()).show_details(self))
def setData(self) -> None:
self.total_count = BasicSubmission.__database_session__.query(BasicSubmission).count()
def setData(self, page: int = 1, page_size: int = 250) -> None:
"""
sets data in model
"""
self.data = BasicSubmission.submissions_to_df()
"""
self.data = BasicSubmission.submissions_to_df(page=page)
try:
self.data['Id'] = self.data['Id'].apply(str)
self.data['Id'] = self.data['Id'].str.zfill(4)
@@ -93,17 +96,17 @@ class SubmissionsSheet(QTableView):
proxyModel = QSortFilterProxyModel()
proxyModel.setSourceModel(pandasModel(self.data))
self.setModel(proxyModel)
def contextMenuEvent(self, event):
"""
Creates actions for right click menu events.
Args:
event (_type_): the item of interest
"""
"""
# logger.debug(event().__dict__)
id = self.selectionModel().currentIndex()
id = id.sibling(id.row(),0).data()
id = id.sibling(id.row(), 0).data()
submission = BasicSubmission.query(id=id)
self.menu = QMenu(self)
self.con_actions = submission.custom_context_events()
@@ -115,13 +118,13 @@ class SubmissionsSheet(QTableView):
# add other required actions
self.menu.popup(QCursor.pos())
def triggered_action(self, action_name:str):
def triggered_action(self, action_name: str):
"""
Calls the triggered action from the context menu
Args:
action_name (str): name of the action from the menu
"""
"""
# logger.debug(f"Action: {action_name}")
# logger.debug(f"Responding with {self.con_actions[action_name]}")
func = self.con_actions[action_name]
@@ -155,16 +158,16 @@ class SubmissionsSheet(QTableView):
count = 0
for run in runs:
new_run = dict(
start_time=run[0].strip(),
rsl_plate_num=run[1].strip(),
sample_count=run[2].strip(),
status=run[3].strip(),
experiment_name=run[4].strip(),
end_time=run[5].strip()
)
start_time=run[0].strip(),
rsl_plate_num=run[1].strip(),
sample_count=run[2].strip(),
status=run[3].strip(),
experiment_name=run[4].strip(),
end_time=run[5].strip()
)
# NOTE: elution columns are item 6 in the comma split list to the end
for ii in range(6, len(run)):
new_run[f"column{str(ii-5)}_vol"] = run[ii]
new_run[f"column{str(ii - 5)}_vol"] = run[ii]
# NOTE: Lookup imported submissions
sub = BasicSubmission.query(rsl_plate_num=new_run['rsl_plate_num'])
# NOTE: If no such submission exists, move onto the next run
@@ -208,13 +211,13 @@ class SubmissionsSheet(QTableView):
count = 0
for run in runs:
new_run = dict(
start_time=run[0].strip(),
rsl_plate_num=run[1].strip(),
biomek_status=run[2].strip(),
quant_status=run[3].strip(),
experiment_name=run[4].strip(),
end_time=run[5].strip()
)
start_time=run[0].strip(),
rsl_plate_num=run[1].strip(),
biomek_status=run[2].strip(),
quant_status=run[3].strip(),
experiment_name=run[4].strip(),
end_time=run[5].strip()
)
# NOTE: lookup imported submission
sub = BasicSubmission.query(rsl_number=new_run['rsl_plate_num'])
# NOTE: if imported submission doesn't exist move on to next run
@@ -225,33 +228,3 @@ class SubmissionsSheet(QTableView):
sub.save()
report.add_result(Result(msg=f"We added {count} logs to the database.", status='Information'))
return report
# @report_result
# def generate_report(self, *args):
# """
# Make a report
# """
# report = Report()
# result = self.generate_report_function()
# report.add_result(result)
# return report
#
# def generate_report_function(self):
# """
# Generate a summary of activities for a time period
#
# Args:
# obj (QMainWindow): original app window
#
# Returns:
# Tuple[QMainWindow, dict]: Collection of new main app window and result dict
# """
# report = Report()
# # NOTE: ask for date ranges
# dlg = ReportDatePicker()
# if dlg.exec():
# info = dlg.parse_form()
# fname = select_save_file(obj=self, default_name=f"Submissions_Report_{info['start_date']}-{info['end_date']}.xlsx", extension="xlsx")
# rp = ReportMaker(start_date=info['start_date'], end_date=info['end_date'])
# rp.write_report(filename=fname, obj=self)
# return report