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Pre code cleanup

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This commit is contained in:
lwark
2024-09-25 13:04:08 -05:00
parent b0e9f9996d
commit 4c7b737326
11 changed files with 253 additions and 64 deletions
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18
src/submissions/backend/excel/parser.py
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@@ -65,14 +65,24 @@ class SheetParser(object):
"""
parser = InfoParser(xl=self.xl, submission_type=self.submission_type, sub_object=self.sub_object)
info = parser.parse_info()
self.info_map = parser.map
try:
check = info['submission_type']['value'] not in [None, "None", "", " "]
except KeyError:
return
logger.debug(f"Checking old submission type: {self.submission_type.name} against new: {info['submission_type']['value']}")
if self.submission_type.name != info['submission_type']['value']:
if info['submission_type']['value'] not in [None, "None", "", " "]:
# logger.debug(f"info submission type: {info}")
if check:
self.submission_type = SubmissionType.query(name=info['submission_type']['value'])
logger.debug(f"Updated self.submission_type to {self.submission_type}. Rerunning parse.")
self.parse_info()
return
self.info_map = parser.map
else:
self.submission_type = RSLNamer.retrieve_submission_type(filename=self.filepath)
self.parse_info()
for k, v in info.items():
match k:
# NOTE: exclude samples.
@@ -86,7 +96,7 @@ class SheetParser(object):
# logger.debug(f"Updated self.submission_type to {self.submission_type}")
case _:
self.sub[k] = v
print(f"\n\n {self.sub} \n\n")
# print(f"\n\n {self.sub} \n\n")
def parse_reagents(self, extraction_kit: str | None = None):