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Added importing of PCR results.

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This commit is contained in:
Landon Wark
2023-03-28 14:44:13 -05:00
parent d50a9793c7
commit 3c9f095937
16 changed files with 562 additions and 70 deletions
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12
src/submissions/frontend/custom_widgets/misc.py
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@@ -2,6 +2,7 @@
Contains miscellaneous widgets for frontend functions
'''
from datetime import date
import typing
from PyQt6.QtWidgets import (
QLabel, QVBoxLayout,
QLineEdit, QComboBox, QDialog,
@@ -10,10 +11,11 @@ from PyQt6.QtWidgets import (
QHBoxLayout,
)
from PyQt6.QtCore import Qt, QDate, QSize
# from submissions.backend.db.functions import lookup_kittype_by_use
# from submissions.backend.db import lookup_regent_by_type_name_and_kit_name
from tools import check_not_nan
from ..functions import extract_form_info
from backend.db import get_all_reagenttype_names, lookup_all_sample_types, create_kit_from_yaml, lookup_regent_by_type_name#, lookup_regent_by_type_name_and_kit_name
from backend.db import get_all_reagenttype_names, lookup_all_sample_types, create_kit_from_yaml, lookup_regent_by_type_name, lookup_kittype_by_use#, lookup_regent_by_type_name_and_kit_name
from backend.excel.parser import SheetParser
from jinja2 import Environment, FileSystemLoader
import sys
@@ -329,9 +331,13 @@ class ImportReagent(QComboBox):
else:
if len(relevant_reagents) > 1:
logger.debug(f"Found {prsr.sub[item]['lot']} in relevant reagents: {relevant_reagents}. Moving to front of list.")
relevant_reagents.insert(0, relevant_reagents.pop(relevant_reagents.index(prsr.sub[item]['lot'])))
idx = relevant_reagents.index(str(prsr.sub[item]['lot']))
logger.debug(f"The index we got for {prsr.sub[item]['lot']} in {relevant_reagents} was {idx}")
moved_reag = relevant_reagents.pop(idx)
relevant_reagents.insert(0, moved_reag)
else:
logger.debug(f"Found {prsr.sub[item]['lot']} in relevant reagents: {relevant_reagents}. But no need to move due to short list.")
logger.debug(f"New relevant reagents: {relevant_reagents}")
self.setObjectName(f"lot_{item}")
self.addItems(relevant_reagents)