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Qubit results parsing complete.

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lwark
2025-09-23 08:57:40 -05:00
parent 6f1202d3ba
commit 39d20bbc22
15 changed files with 113 additions and 53 deletions
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8
src/submissions/backend/validators/pydant.py
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@@ -12,7 +12,7 @@ from typing import List, Tuple, Literal, Generator
from types import GeneratorType
from . import RSLNamer
from pathlib import Path
from tools import check_not_nan, convert_nans_to_nones, Report, Result, timezone, sort_dict_by_list, row_keys, flatten_list
from tools import check_not_nan, convert_nans_to_nones, Report, Alert, timezone, sort_dict_by_list, row_keys, flatten_list
from backend.db import models
from backend.db.models import *
from sqlalchemy.orm.properties import ColumnProperty
@@ -1397,14 +1397,14 @@ class PydRun(PydBaseClass): #, extra='allow'):
Converts this instance into a backend.db.models.procedure.BasicRun instance
Returns:
Tuple[BasicRun, Result]: BasicRun instance, result object
Tuple[BasicRun, Alert]: BasicRun instance, result object
"""
report = Report()
dicto = self.improved_dict()
instance, result = Run.query_or_create(submissiontype=self.submission_type['value'],
rsl_plate_number=self.rsl_plate_number['value'])
if instance is None:
report.add_result(Result(msg="Overwrite Cancelled."))
report.add_result(Alert(msg="Overwrite Cancelled."))
return None, report
report.add_result(result)
self.handle_duplicate_samples()
@@ -1585,7 +1585,7 @@ class PydRun(PydBaseClass): #, extra='allow'):
expired.append(f"{reagent.role}, {reagent.lot}: {reagent.expiry.date()} + {role_eol.days}")
if expired:
output = '\n'.join(expired)
result = Result(status="Warning",
result = Alert(status="Warning",
msg=f"The following reagents are expired:\n\n{output}"
)
report.add_result(result)