Qubit results parsing complete.

src/submissions/backend/db/models/__init__.py

@@ -18,7 +18,7 @@ from sqlalchemy.exc import ArgumentError
 from typing import Any, List, ClassVar
 from pathlib import Path
 from sqlalchemy.orm.relationships import _RelationshipDeclared
-from tools import report_result, list_sort_dict, jinja_template_loading, Report, Result, ctx
+from tools import report_result, list_sort_dict, jinja_template_loading, Report, Alert, ctx
 
 # NOTE: Load testing environment
 if 'pytest' in sys.modules:
@@ -364,7 +364,7 @@ class BaseClass(Base):
             logger.error(f"Error message: {type(e)}")
             logger.error(pformat(self.__dict__))
             self.__database_session__.rollback()
-            report.add_result(Result(msg=e, status="Critical"))
+            report.add_result(Alert(msg=e, status="Critical"))
             return report
 
     @property

src/submissions/backend/db/models/procedures.py

@@ -4,13 +4,14 @@ All kittype and reagent related models
 from __future__ import annotations
 import zipfile, logging, re, numpy as np
 from operator import itemgetter
+from pathlib import Path
 from pprint import pformat
 from sqlalchemy import Column, String, TIMESTAMP, JSON, INTEGER, ForeignKey, Interval, Table, FLOAT, func
 from sqlalchemy.ext.hybrid import hybrid_property
 from sqlalchemy.orm import relationship, validates, Query, declared_attr
 from sqlalchemy.ext.associationproxy import association_proxy
 from datetime import date, datetime, timedelta
-from tools import check_authorization, setup_lookup, Report, Result, check_regex_match, timezone, \
+from tools import check_authorization, setup_lookup, Report, Alert, check_regex_match, timezone, \
     jinja_template_loading, flatten_list
 from typing import List, Literal, Generator, Any, Tuple, TYPE_CHECKING
 from . import BaseClass, ClientLab, LogMixin
@@ -926,10 +927,13 @@ class Procedure(BaseClass):
         logger.info(f"Add Results! {resultstype_name}")
         from backend.managers import results
         results_manager = getattr(results, f"{resultstype_name}Manager")
-        rs = results_manager(procedure=self, parent=obj)
+        rs = results_manager(procedure=self, parent=obj, fname=Path("C:\\Users\lwark\Documents\Submission_Forms\QubitData_18-09-2025_13-43-53.csv"))
         procedure = rs.procedure_to_pydantic()
         samples = rs.samples_to_pydantic()
-        procedure_sql = procedure.to_sql()
+        if procedure:
+            procedure_sql = procedure.to_sql()
+        else:
+            return
         procedure_sql.save()
         for sample in samples:
             sample_sql = sample.to_sql()

src/submissions/backend/db/models/submissions.py

@@ -18,7 +18,8 @@ from sqlalchemy.orm.attributes import flag_modified
 from sqlalchemy.ext.associationproxy import association_proxy
 from sqlalchemy.exc import OperationalError as AlcOperationalError, IntegrityError as AlcIntegrityError, StatementError
 from sqlite3 import OperationalError as SQLOperationalError, IntegrityError as SQLIntegrityError
-from tools import setup_lookup, jinja_template_loading, create_holidays_for_year, check_dictionary_inclusion_equality, is_power_user
+from tools import (setup_lookup, jinja_template_loading, create_holidays_for_year,
+                   check_dictionary_inclusion_equality, is_power_user, row_map)
 from datetime import datetime, date
 from typing import List, Literal, Generator, TYPE_CHECKING
 from pathlib import Path
@@ -1865,6 +1866,16 @@ class ProcedureSampleAssociation(BaseClass):
 
     results = relationship("Results", back_populates="sampleprocedureassociation")  #: associated results
 
+    @property
+    def well(self):
+        if self.row > 0:
+            if self.column > 0:
+                return f"{row_map[self.row]}{self.column}"
+            else:
+                return self.row
+        else:
+            return None
+
     @classmethod
     def query(cls, sample: Sample | str | None = None, procedure: Procedure | str | None = None, limit: int = 0,
               **kwargs):