Attempt at javascript.

src/submissions/backend/db/models/kits.py

@@ -1207,7 +1207,7 @@ class ProcedureType(BaseClass):
         # NOTE: An overly complicated list comprehension create a list of sample locations
         # NOTE: next will return a blank cell if no value found for row/column
         env = jinja_template_loading()
-        template = env.get_template("plate_map.html")
+        template = env.get_template("support/plate_map.html")
         html = template.render(plate_rows=self.plate_rows, plate_columns=self.plate_columns, samples=sample_dicts, vw=vw)
         return html + "<br/>"
 

src/submissions/backend/db/models/submissions.py

@@ -682,7 +682,7 @@ class Run(BaseClass, LogMixin):
                           for row in rows
                           for column in columns]
         env = jinja_template_loading()
-        template = env.get_template("plate_map.html")
+        template = env.get_template("support/plate_map.html")
         html = template.render(samples=output_samples, PLATE_ROWS=plate_rows, PLATE_COLUMNS=plate_columns)
         return html + "<br/>"
 
@@ -1626,7 +1626,7 @@ class ClientSubmissionSampleAssociation(BaseClass):
         # NOTE: Since there is no PCR, negliable result is necessary.
         sample = self.to_sub_dict()
         env = jinja_template_loading()
-        template = env.get_template("tooltip.html")
+        template = env.get_template("support/tooltip.html")
         tooltip_text = template.render(fields=sample)
         try:
             control = self.sample.control
@@ -1880,7 +1880,7 @@ class RunSampleAssociation(BaseClass):
         # NOTE: Since there is no PCR, negliable result is necessary.
         sample = self.to_sub_dict()
         env = jinja_template_loading()
-        template = env.get_template("tooltip.html")
+        template = env.get_template("support/tooltip.html")
         tooltip_text = template.render(fields=sample)
         try:
             control = self.sample.control

src/submissions/frontend/widgets/procedure_creation.py

@@ -2,6 +2,8 @@
 
 """
 from __future__ import annotations
+
+import os
 import sys, logging
 from pathlib import Path
 from pprint import pformat
@@ -15,7 +17,7 @@ from typing import TYPE_CHECKING, Any
 
 if TYPE_CHECKING:
     from backend.db.models import Run, ProcedureType
-from tools import jinja_template_loading, get_application_from_parent
+from tools import jinja_template_loading, get_application_from_parent, render_details_template
 from backend.validators import PydProcedure
 
 logger = logging.getLogger(f"submissions.{__name__}")
@@ -54,13 +56,15 @@ class ProcedureCreation(QDialog):
         self.webview.page().setWebChannel(self.channel)
 
     def set_html(self):
-        env = jinja_template_loading()
+        html = render_details_template(
-        template = env.get_template("procedure_creation.html")
+            template_name="procedure_creation",
-        template_path = Path(template.environment.loader.__getattribute__("searchpath")[0])
+            # css_in=['new_context_menu'],
-        with open(template_path.joinpath("css", "styles.css"), "r") as f:
+            js_in=["procedure_form", "grid_drag", "context_menu"],
-            css = f.read()
+            proceduretype=self.proceduretype.as_dict,
-        html = template.render(proceduretype=self.proceduretype.as_dict, run=self.run.to_dict(),
+            run=self.run.to_dict(),
-                               procedure=self.created_procedure.__dict__, plate_map=self.plate_map, css=css)
+            procedure=self.created_procedure.__dict__,
+            plate_map=self.plate_map
+        )
         with open("procedure.html", "w") as f:
             f.write(html)
         self.webview.setHtml(html)
@@ -86,21 +90,9 @@ class ProcedureCreation(QDialog):
     def rearrange_plate(self, sample_list: list):
         self.created_procedure.update_samples(sample_list=sample_list)
 
-    @pyqtSlot(str, str)
+    @pyqtSlot(str)
-    def log_drag(self, source_well: str, destination_well: str):
+    def log(self, logtext: str):
-        logger.debug(f"Source Index: {source_well} Destination Index: {destination_well}")
+        logger.debug(logtext)
-        # source_well = source_well.split("-")
-        # destination_well = destination_well.split("-")
-        # source_row = int(source_well[0])
-        # source_column = int(source_well[1])
-        # destination_row = int(destination_well[0])
-        # destination_column = int(destination_well[1])
-        # self.created_procedure.shuffle_samples(
-        #     source_row=source_row,
-        #     source_column=source_column,
-        #     destination_row=destination_row,
-        #     destination_column=destination_column
-        # )
 
 
 # class ProcedureWebViewer(QWebEngineView):

src/submissions/templates/css/styles.css

@@ -115,6 +115,9 @@ div.gallery {
     display: none;
     position: absolute;
     z-index: 10;
+    background-color: rgba(229, 231, 228, 0.7);
+    border-radius: 2px;
+    border-color: black;
 }
 
 .context-menu--active {

src/submissions/templates/details.html

@@ -5,7 +5,10 @@
     <meta charset="UTF-8">
     {% if css %}
     <style>
-        {{ css }}
+        {% for c in css %}
+        {{ c }}
+
+        {% endfor %}
     </style>
     {% endif %}
     <script src="qrc:///qtwebchannel/qwebchannel.js"></script>
@@ -18,12 +21,12 @@
 {% endblock %}
 {% block signing_button %}{% endblock %}
 </body>
-<script>
+
 {% block script %}
-    var backend;
+{% for j in js%}
-    new QWebChannel(qt.webChannelTransport, function (channel) {
+<script>
-      backend = channel.objects.backend;
+    {{ j }}
-    });
-{% endblock %}
 </script>
+{% endfor %}
+{% endblock %}
 </html>

src/submissions/templates/js/context_menu.js

@@ -0,0 +1,260 @@
+//function openMulti() {
+//  if (document.querySelector(".selectWrapper").style.pointerEvents == "all") {
+//    document.querySelector(".selectWrapper").style.opacity = 0;
+//    document.querySelector(".selectWrapper").style.pointerEvents = "none";
+//    resetAllMenus();
+//  } else {
+//    document.querySelector(".selectWrapper").style.opacity = 1;
+//    document.querySelector(".selectWrapper").style.pointerEvents = "all";
+//  }
+//}
+//function nextMenu(e) {
+//  menuIndex = eval(event.target.parentNode.id.slice(-1));
+//  document.querySelectorAll(".multiSelect")[menuIndex].style.transform =
+//    "translateX(-100%)";
+//  // document.querySelectorAll(".multiSelect")[menuIndex].style.clipPath = "polygon(0 0, 0 0, 0 100%, 0% 100%)";
+//  document.querySelectorAll(".multiSelect")[menuIndex].style.clipPath =
+//    "polygon(100% 0, 100% 0, 100% 100%, 100% 100%)";
+//  document.querySelectorAll(".multiSelect")[menuIndex + 1].style.transform =
+//    "translateX(0)";
+//  document.querySelectorAll(".multiSelect")[menuIndex + 1].style.clipPath =
+//    "polygon(0 0, 100% 0, 100% 100%, 0% 100%)";
+//}
+//function prevMenu(e) {
+//  menuIndex = eval(event.target.parentNode.id.slice(-1));
+//  document.querySelectorAll(".multiSelect")[menuIndex].style.transform =
+//    "translateX(100%)";
+//  document.querySelectorAll(".multiSelect")[menuIndex].style.clipPath =
+//    "polygon(0 0, 0 0, 0 100%, 0% 100%)";
+//  document.querySelectorAll(".multiSelect")[menuIndex - 1].style.transform =
+//    "translateX(0)";
+//  document.querySelectorAll(".multiSelect")[menuIndex - 1].style.clipPath =
+//    "polygon(0 0, 100% 0, 100% 100%, 0% 100%)";
+//}
+//function resetAllMenus() {
+//  setTimeout(function () {
+//    var x = document.getElementsByClassName("multiSelect");
+//    var i;
+//    for (i = 1; i < x.length; i++) {
+//      x[i].style.transform = "translateX(100%)";
+//      x[i].style.clipPath = "polygon(0 0, 0 0, 0 100%, 0% 100%)";
+//    }
+//    document.querySelectorAll(".multiSelect")[0].style.transform =
+//      "translateX(0)";
+//    document.querySelectorAll(".multiSelect")[0].style.clipPath =
+//      "polygon(0 0, 100% 0, 100% 100%, 0% 100%)";
+//  }, 300);
+//}
+
+
+///////////////////////////////////////
+///////////////////////////////////////
+//
+// H E L P E R F U N C T I O N S
+//
+///////////////////////////////////////
+///////////////////////////////////////
+
+function clickInsideElement( e, className ) {
+    var el = e.srcElement || e.target;
+    if ( el.classList.contains(className) ) {
+        return el;
+    } else {
+        while ( el = el.parentNode ) {
+            if ( el.classList && el.classList.contains(className) ) {
+                return el;
+            }
+        }
+    }
+    return false;
+}
+
+function getPosition(e) {
+    var posx = 0;
+    var posy = 0;
+    if (!e) var e = window.event;
+    if (e.pageX || e.pageY) {
+        posx = e.pageX;
+        posy = e.pageY;
+    } else if (e.clientX || e.clientY) {
+        posx = e.clientX + document.body.scrollLeft + document.documentElement.scrollLeft;
+        posy = e.clientY + document.body.scrollTop + document.documentElement.scrollTop;
+    }
+    return {
+        x: posx,
+        y: posy
+    }
+}
+
+// updated positionMenu function
+function positionMenu(e) {
+    clickCoords = getPosition(e);
+    clickCoordsX = clickCoords.x;
+    clickCoordsY = clickCoords.y;
+    menuWidth = menu.offsetWidth + 4;
+    menuHeight = menu.offsetHeight + 4;
+    windowWidth = window.innerWidth;
+    windowHeight = window.innerHeight;
+    if ( (windowWidth - clickCoordsX) < menuWidth ) {
+        menu.style.left = windowWidth - menuWidth + "px";
+    } else {
+        menu.style.left = clickCoordsX + "px";
+    }
+    if ( (windowHeight - clickCoordsY) < menuHeight ) {
+        menu.style.top = windowHeight - menuHeight + "px";
+    } else {
+        menu.style.top = clickCoordsY + "px";
+    }
+}
+
+function menuItemListener( link ) {
+    const contextIndex = [...gridContainer.children].indexOf(taskItemInContext);
+    const task_id = taskItemInContext.getAttribute("id")
+    backend.log("Task action - " + link.getAttribute("data-action"))
+    switch (link.getAttribute("data-action")) {
+        case "InsertSample":
+            insertSample(contextIndex, task_id);
+        break;
+        case "InsertControl":
+            insertControl(contextIndex);
+        break;
+        case "RemoveSample":
+            removeSample(contextIndex);
+        break;
+        default:
+            backend.log("default");
+        break;
+    }
+    toggleMenuOff();
+}
+
+///////////////////////////////////////
+///////////////////////////////////////
+//
+// C O R E F U N C T I O N S
+//
+///////////////////////////////////////
+///////////////////////////////////////
+/**
+* Variables.
+*/
+var contextMenuClassName = "context-menu";
+var contextMenuItemClassName = "context-menu__item";
+var contextMenuLinkClassName = "context-menu__link";
+var contextMenuActive = "context-menu--active";
+var taskItemClassName = "well";
+var taskItemInContext;
+var clickCoords;
+var clickCoordsX;
+var clickCoordsY;
+var menu = document.getElementById(contextMenuClassName);
+var menuItems = menu.getElementsByClassName(contextMenuItemClassName);
+var menuHeader = document.getElementById("menu-header");
+var menuState = 0;
+var menuWidth;
+var menuHeight;
+var menuPosition;
+var menuPositionX;
+var menuPositionY;
+var windowWidth;
+var windowHeight;
+/**
+* Initialise our application's code.
+*/
+function init() {
+    contextListener();
+    clickListener();
+    keyupListener();
+    resizeListener();
+}
+/**
+* Listens for contextmenu events.
+*/
+function contextListener() {
+    document.addEventListener( "contextmenu", function(e) {
+        taskItemInContext = clickInsideElement( e, taskItemClassName );
+        if ( taskItemInContext ) {
+            e.preventDefault();
+            menuHeader.innerText = taskItemInContext.id;
+            toggleMenuOn();
+            positionMenu(e);
+        } else {
+            taskItemInContext = null;
+            menuHeader.text = "";
+            toggleMenuOff();
+        }
+    });
+}
+
+/**
+* Listens for click events.
+*/
+function clickListener() {
+    document.addEventListener( "click", function(e) {
+        var clickeElIsLink = clickInsideElement( e, contextMenuLinkClassName );
+        if ( clickeElIsLink ) {
+            e.preventDefault();
+            menuItemListener( clickeElIsLink );
+        } else {
+            var button = e.which || e.button;
+            if ( button === 1 ) {
+                toggleMenuOff();
+            }
+        }
+    });
+}
+/**
+* Listens for keyup events.
+*/
+function keyupListener() {
+    window.onkeyup = function(e) {
+    if ( e.keyCode === 27 ) {
+        toggleMenuOff();
+        }
+    }
+}
+/**
+* Turns the custom context menu on.
+*/
+function toggleMenuOn() {
+    if ( menuState !== 1 ) {
+        menuState = 1;
+        menu.classList.add(contextMenuActive);
+    }
+}
+function toggleMenuOff() {
+    if ( menuState !== 0 ) {
+        menuState = 0;
+        menu.classList.remove(contextMenuActive);
+    }
+}
+
+///////////////////////////////////////
+///////////////////////////////////////
+//
+// B A C K E N D  F U N C T I O N S
+//
+///////////////////////////////////////
+///////////////////////////////////////
+
+function insertSample( index ) {
+    backend.log( "Index - " + index + ", InsertSample");
+}
+
+function insertControl( index ) {
+    backend.log( "Index - " + index + ", InsertEN");
+    var existing_ens = document.getElementsByClassName("EN");
+    backend.log(existing_ens.length);
+}
+
+function removeSample( index ) {
+    backend.log( "Index - " + index + ", RemoveSample");
+}
+
+
+/**
+* Run the app.
+*/
+init();
+
+

src/submissions/templates/js/details.js

@@ -0,0 +1,4 @@
+var backend;
+new QWebChannel(qt.webChannelTransport, function (channel) {
+  backend = channel.objects.backend;
+});

src/submissions/templates/js/grid_drag.js

@@ -0,0 +1,51 @@
+
+
+    const gridContainer = document.getElementById("plate-container");
+    let draggedItem = null;
+
+    //Handle Drag start
+    gridContainer.addEventListener("dragstart", (e) => {
+      draggedItem = e.target;
+      draggedItem.style.opacity = "0.5";
+    });
+
+    //Handle Drag End
+    gridContainer.addEventListener("dragend", (e) => {
+      e.target.style.opacity = "1";
+      draggedItem = null;
+    });
+
+    //handle dragging ove grid items
+    gridContainer.addEventListener("dragover", (e) => {
+      e.preventDefault();
+    });
+
+    //Handle Drop
+    gridContainer.addEventListener("drop", (e) => {
+      e.preventDefault();
+
+      const targetItem = e.target;
+      if (
+        targetItem &&
+        targetItem !== draggedItem &&
+        targetItem.classList.contains("well")
+      ) {
+        const draggedIndex = [...gridContainer.children].indexOf(draggedItem);
+        const targetIndex = [...gridContainer.children].indexOf(targetItem);
+        if (draggedIndex < targetIndex) {
+          backend.log_drag(draggedIndex.toString(), targetIndex.toString() + " Lesser");
+          gridContainer.insertBefore(draggedItem, targetItem.nextSibling);
+
+        } else {
+          backend.log_drag(draggedIndex.toString(), targetIndex.toString() + " Greater");
+          gridContainer.insertBefore(draggedItem, targetItem);
+
+        }
+        output = [];
+        fullGrid = [...gridContainer.children];
+        fullGrid.forEach(function(item, index) {
+            output.push({sample_id: item.id, index: index + 1})
+        });
+        backend.rearrange_plate(output);
+      }
+    });

src/submissions/templates/js/procedure_form.js

@@ -0,0 +1,19 @@
+document.getElementById("kittype").addEventListener("change", function() {
+    backend.update_kit(this.value);
+})
+
+var formchecks = document.getElementsByClassName('form_check');
+
+for(let i = 0; i < formchecks.length; i++) {
+  formchecks[i].addEventListener("change", function() {
+    backend.check_toggle(formchecks[i].id, formchecks[i].checked);
+  })
+};
+
+var formtexts = document.getElementsByClassName('form_text');
+
+for(let i = 0; i < formtexts.length; i++) {
+  formtexts[i].addEventListener("input", function() {
+    backend.text_changed(formtexts[i].id, formtexts[i].value);
+  })
+};

src/submissions/templates/procedure_creation.html

@@ -44,114 +44,15 @@
                 {% endif %}
             </div>
         </div>
+        {% include 'support/context_menu.html' %}
         {% endblock %}
-        <nav class="context-menu">
+
-            <ul class="context-menu__items">
-                <li class="context-menu__item">
-                    <a href="#" class="context-menu__link">
-                        <i class="fa fa-eye"></i> View Task
-                    </a>
-                </li>
-                <li class="context-menu__item">
-                    <a href="#" class="context-menu__link">
-                        <i class="fa fa-edit"></i> Edit Task
-                    </a>
-                </li>
-                <li class="context-menu__item">
-                    <a href="#" class="context-menu__link">
-                        <i class="fa fa-times"></i> Delete Task
-                    </a>
-                </li>
-            </ul>
-        </nav>
     </body>
-    <script>
+
     {% block script %}
     {{ super() }}
-
-        document.getElementById("kittype").addEventListener("change", function() {
-            backend.update_kit(this.value);
-        })
-
-        var formchecks = document.getElementsByClassName('form_check');
-
-        for(let i = 0; i < formchecks.length; i++) {
-          formchecks[i].addEventListener("change", function() {
-            backend.check_toggle(formchecks[i].id, formchecks[i].checked);
-          })
-        };
-
-        var formtexts = document.getElementsByClassName('form_text');
-
-        for(let i = 0; i < formtexts.length; i++) {
-          formtexts[i].addEventListener("input", function() {
-            backend.text_changed(formtexts[i].id, formtexts[i].value);
-          })
-        };
-
-        const gridContainer = document.getElementById("plate-container");
-		let draggedItem = null;
-
-		//Handle Drag start
-		gridContainer.addEventListener("dragstart", (e) => {
-		  draggedItem = e.target;
-		  draggedItem.style.opacity = "0.5";
-		});
-
-		//Handle Drag End
-		gridContainer.addEventListener("dragend", (e) => {
-		  e.target.style.opacity = "1";
-		  draggedItem = null;
-		});
-
-		//handle dragging ove grid items
-		gridContainer.addEventListener("dragover", (e) => {
-		  e.preventDefault();
-		});
-
-		//Handle Drop
-		gridContainer.addEventListener("drop", (e) => {
-		  e.preventDefault();
-
-		  const targetItem = e.target;
-		  if (
-			targetItem &&
-			targetItem !== draggedItem &&
-			targetItem.classList.contains("well")
-		  ) {
-			const draggedIndex = [...gridContainer.children].indexOf(draggedItem);
-			const targetIndex = [...gridContainer.children].indexOf(targetItem);
-			if (draggedIndex < targetIndex) {
-			  backend.log_drag(draggedIndex.toString(), targetIndex.toString() + " Lesser");
-			  gridContainer.insertBefore(draggedItem, targetItem.nextSibling);
-
-			} else {
-			  backend.log_drag(draggedIndex.toString(), targetIndex.toString() + " Greater");
-			  gridContainer.insertBefore(draggedItem, targetItem);
-
-			}
-			output = [];
-			fullGrid = [...gridContainer.children];
-			fullGrid.forEach(function(item, index) {
-			    output.push({sample_id: item.id, index: index + 1})
-			});
-			backend.rearrange_plate(output);
-		  }
-		});
-	// Context Menu Functionality
-	var wells = document.querySelectorAll(".well");
-    for ( var i = 0, len = wells.length; i < len; i++ ) {
-        var welloi = wells[i];
-
-        welloi.addEventListener( "contextmenu", function(e) {
-                well = e.target
-                backend.log_drag(well.id, "el");
-            });
-        };
-
-
-
-
     {% endblock %}
-    </script>
+
+
+
 </html>

src/submissions/templates/support/context_menu.html

@@ -0,0 +1,20 @@
+        <nav class="context-menu" id="context-menu">
+            <h4 id="menu-header"></h4>
+            <ul class="context-menu__items">
+                <li class="context-menu__item">
+                    <a href="#" class="context-menu__link" data-action="InsertSample">
+                        <i class="fa fa-eye"></i> Insert Sample
+                    </a>
+                </li>
+                <li class="context-menu__item">
+                    <a href="#" class="context-menu__link" data-action="InsertControl">
+                        <i class="fa fa-edit"></i> Insert EN
+                    </a>
+                </li>
+                <li class="context-menu__item">
+                    <a href="#" class="context-menu__link" data-action="RemoveSample">
+                        <i class="fa fa-times"></i> Remove Sample
+                    </a>
+                </li>
+            </ul>
+        </nav>

src/submissions/tools/__init__.py

@@ -443,6 +443,30 @@ def jinja_template_loading() -> Environment:
     return env
 
 
+def render_details_template(template_name:str, css_in:List[str]|str=[], js_in:List[str]|str=[], **kwargs) -> str:
+    if isinstance(css_in, str):
+        css_in = [css_in]
+    css_in = ["styles"] + css_in
+    css_in = [project_path.joinpath("src", "submissions", "templates", "css", f"{c}.css") for c in css_in]
+    if isinstance(js_in, str):
+        js_in = [js_in]
+    js_in = ["details"] + js_in
+    js_in = [project_path.joinpath("src", "submissions", "templates", "js", f"{j}.js") for j in js_in]
+    env = jinja_template_loading()
+    template = env.get_template(f"{template_name}.html")
+    # template_path = Path(template.environment.loader.__getattribute__("searchpath")[0])
+    css_out = []
+    for css in css_in:
+        with open(css, "r") as f:
+            css_out.append(f.read())
+    js_out = []
+    for js in js_in:
+        with open(js, "r") as f:
+            js_out.append(f.read())
+    return template.render(css=css_out, js=js_out, **kwargs)
+
+
+
 def convert_well_to_row_column(input_str: str) -> Tuple[int, int]:
     """
     Converts typical alphanumeric (i.e. "A2") to row, column