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New table view.

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This commit is contained in:
lwark
2025-05-06 13:21:03 -05:00
parent 5508f68bc8
commit 20952f2edd
10 changed files with 382 additions and 17 deletions
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28
src/submissions/frontend/widgets/submission_widget.py
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@@ -10,7 +10,7 @@ from .functions import select_open_file, select_save_file
import logging
from pathlib import Path
from tools import Report, Result, check_not_nan, main_form_style, report_result, get_application_from_parent
from backend.excel.parser import SheetParser
from backend.excel.parsers import SheetParser, InfoParserV2
from backend.validators import PydSubmission, PydReagent
from backend.db import (
Organization, SubmissionType, Reagent,
@@ -121,13 +121,14 @@ class SubmissionFormContainer(QWidget):
return report
# NOTE: create sheetparser using excel sheet and context from gui
try:
self.prsr = SheetParser(filepath=fname)
# self.prsr = SheetParser(filepath=fname)
self.parser = InfoParserV2(filepath=fname)
except PermissionError:
logger.error(f"Couldn't get permission to access file: {fname}")
return
except AttributeError:
self.prsr = SheetParser(filepath=fname)
self.pyd = self.prsr.to_pydantic()
self.parser = InfoParserV2(filepath=fname)
self.pyd = self.parser.to_pydantic()
# logger.debug(f"Samples: {pformat(self.pyd.samples)}")
checker = SampleChecker(self, "Sample Checker", self.pyd)
if checker.exec():
@@ -177,11 +178,13 @@ class SubmissionFormWidget(QWidget):
self.missing_info = []
self.submission_type = SubmissionType.query(name=self.pyd.submission_type['value'])
basic_submission_class = self.submission_type.submission_class
logger.debug(f"Basic submission class: {basic_submission_class}")
defaults = basic_submission_class.get_default_info("form_recover", "form_ignore", submission_type=self.pyd.submission_type['value'])
self.recover = defaults['form_recover']
self.ignore = defaults['form_ignore']
self.layout = QVBoxLayout()
for k in list(self.pyd.model_fields.keys()) + list(self.pyd.model_extra.keys()):
logger.debug(f"Pydantic field: {k}")
if k in self.ignore:
logger.warning(f"{k} in form_ignore {self.ignore}, not creating widget")
continue
@@ -197,6 +200,7 @@ class SubmissionFormWidget(QWidget):
value = self.pyd.model_extra[k]
except KeyError:
value = dict(value=None, missing=True)
logger.debug(f"Pydantic value: {value}")
add_widget = self.create_widget(key=k, value=value, submission_type=self.submission_type,
sub_obj=basic_submission_class, disable=check)
if add_widget is not None:
@@ -208,7 +212,8 @@ class SubmissionFormWidget(QWidget):
self.layout.addWidget(self.disabler)
self.disabler.checkbox.checkStateChanged.connect(self.disable_reagents)
self.setStyleSheet(main_form_style)
self.scrape_reagents(self.extraction_kit)
# self.scrape_reagents(self.extraction_kit)
self.setLayout(self.layout)
def disable_reagents(self):
"""
@@ -774,3 +779,16 @@ class SubmissionFormWidget(QWidget):
layout.addWidget(self.label)
layout.addWidget(self.checkbox)
self.setLayout(layout)
class ClientSubmissionFormWidget(SubmissionFormWidget):
def __init__(self, parent: QWidget, submission: PydSubmission, disable: list | None = None) -> None:
super().__init__(parent, submission=submission, disable=disable)
save_btn = QPushButton("Save")
start_run_btn = QPushButton("Save && Start Run")
self.layout.addWidget(save_btn)
self.layout.addWidget(start_run_btn)