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hitpicking complete, pre-addition of WW-Arctic parsers and models.

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Landon Wark
2023-05-31 09:44:20 -05:00
parent 01d95e80f5
commit 1d6823705c
17 changed files with 334 additions and 247 deletions
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9
src/submissions/backend/excel/parser.py
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@@ -132,7 +132,10 @@ class SheetParser(object):
try:
expiry = row[3].date()
except AttributeError as e:
expiry = datetime.strptime(row[3], "%Y-%m-%d")
try:
expiry = datetime.strptime(row[3], "%Y-%m-%d")
except TypeError as e:
expiry = datetime.fromordinal(datetime(1900, 1, 1).toordinal() + row[3] - 2)
else:
logger.debug(f"Date: {row[3]}")
expiry = date.today()
@@ -378,7 +381,7 @@ class PCRParser(object):
self.samples_df['Assessment'] = well_call_df.values
except ValueError:
logger.error("Well call number doesn't match sample number")
logger.debug(f"Well call dr: {well_call_df}")
logger.debug(f"Well call df: {well_call_df}")
# iloc is [row][column]
for ii, row in self.samples_df.iterrows():
try:
@@ -387,7 +390,7 @@ class PCRParser(object):
sample_obj = dict(
sample = row['Sample'],
plate_rsl = self.plate_num,
well_num = row['Well Position']
elution_well = row['Well Position']
)
logger.debug(f"Got sample obj: {sample_obj}")
# logger.debug(f"row: {row}")