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Addition of Equipment and SubmissionType creation.

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This commit is contained in:
Landon Wark
2023-12-20 12:54:37 -06:00
parent 0dd51827a0
commit 0d64095e42
22 changed files with 755 additions and 123 deletions
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25
src/submissions/frontend/widgets/submission_widget.py
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@@ -62,12 +62,13 @@ class SubmissionFormContainer(QWidget):
self.app.result_reporter()
def scrape_reagents(self, *args, **kwargs):
print(f"\n\n{inspect.stack()[1].function}\n\n")
self.scrape_reagents_function(args[0])
caller = inspect.stack()[1].function.__repr__().replace("'", "")
logger.debug(f"Args: {args}, kwargs: {kwargs}")
self.scrape_reagents_function(args[0], caller=caller)
self.kit_integrity_completion()
self.app.report.add_result(self.report)
self.report = Report()
match inspect.stack()[1].function:
match inspect.stack()[1].function.__repr__():
case "import_submission_function":
pass
case _:
@@ -83,7 +84,7 @@ class SubmissionFormContainer(QWidget):
self.kit_integrity_completion_function()
self.app.report.add_result(self.report)
self.report = Report()
match inspect.stack()[1].function:
match inspect.stack()[1].function.__repr__():
case "import_submission_function":
pass
case _:
@@ -161,7 +162,7 @@ class SubmissionFormContainer(QWidget):
logger.debug(f"Outgoing report: {self.report.results}")
logger.debug(f"All attributes of submission container:\n{pformat(self.__dict__)}")
def scrape_reagents_function(self, extraction_kit:str):
def scrape_reagents_function(self, extraction_kit:str, caller:str|None=None):
"""
Extracted scrape reagents function that will run when
form 'extraction_kit' widget is updated.
@@ -173,6 +174,9 @@ class SubmissionFormContainer(QWidget):
Returns:
Tuple[QMainWindow, dict]: Updated application and result
"""
self.form.reagents = []
logger.debug(f"\n\n{caller}\n\n")
# assert caller == "import_submission_function"
report = Report()
logger.debug(f"Extraction kit: {extraction_kit}")
# obj.reagents = []
@@ -195,7 +199,15 @@ class SubmissionFormContainer(QWidget):
# obj.reagents.append(reagent)
# else:
# obj.missing_reagents.append(reagent)
self.form.reagents = self.prsr.sub['reagents']
match caller:
case "import_submission_function":
self.form.reagents = self.prsr.sub['reagents']
case _:
already_have = [reagent for reagent in self.prsr.sub['reagents'] if not reagent.missing]
names = list(set([item.type for item in already_have]))
logger.debug(f"reagents: {already_have}")
reagents = [item.to_pydantic() for item in KitType.query(name=extraction_kit).get_reagents(submission_type=self.pyd.submission_type) if item.name not in names]
self.form.reagents = already_have + reagents
# logger.debug(f"Imported reagents: {obj.reagents}")
# logger.debug(f"Missing reagents: {obj.missing_reagents}")
self.report.add_result(report)
@@ -221,6 +233,7 @@ class SubmissionFormContainer(QWidget):
self.ext_kit = kit_widget.currentText()
# for reagent in obj.pyd.reagents:
for reagent in self.form.reagents:
logger.debug(f"Creating widget for {reagent}")
add_widget = ReagentFormWidget(parent=self, reagent=reagent, extraction_kit=self.ext_kit)
# add_widget.setParent(sub_form_container.form)
self.form.layout().addWidget(add_widget)