Missing sample message after Artic parsing.
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@@ -1,6 +1,7 @@
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'''
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Models for the main submission types.
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'''
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import math
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from . import Base
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from sqlalchemy import Column, String, TIMESTAMP, INTEGER, ForeignKey, Table, JSON, FLOAT
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from sqlalchemy.orm import relationship
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@@ -246,5 +247,24 @@ class WastewaterArtic(BasicSubmission):
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derivative submission type for artic wastewater
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"""
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samples = relationship("WWSample", back_populates="artic_rsl_plate", uselist=True)
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# Can in use the pcr_info from the wastewater? Cause I can't define pcr_info here due to conflicts with that
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__mapper_args__ = {"polymorphic_identity": "wastewater_artic", "polymorphic_load": "inline"}
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# Can it use the pcr_info from the wastewater? Cause I can't define pcr_info here due to conflicts with that
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# Not necessary because we don't get any results for this procedure.
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__mapper_args__ = {"polymorphic_identity": "wastewater_artic", "polymorphic_load": "inline"}
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def calculate_base_cost(self):
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"""
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This method overrides parent method due to multiple output plates from a single submission
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"""
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logger.debug(f"Hello from calculate base cost in WWArtic")
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try:
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cols_count_96 = ceil(int(self.sample_count) / 8)
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except Exception as e:
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logger.error(f"Column count error: {e}")
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# Since we have multiple output plates per submission form, the constant cost will have to reflect this.
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output_plate_count = math.ceil(int(self.sample_count) / 16)
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logger.debug(f"Looks like we have {output_plate_count} output plates.")
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const_cost = self.extraction_kit.constant_cost * output_plate_count
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try:
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self.run_cost = const_cost + (self.extraction_kit.mutable_cost_column * cols_count_96) + (self.extraction_kit.mutable_cost_sample * int(self.sample_count))
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except Exception as e:
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logger.error(f"Calculation error: {e}")
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