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Added submission editting functionality.

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This commit is contained in:
Landon Wark
2024-03-11 11:16:34 -05:00
parent 17572b4a55
commit 08988a14a0
3 changed files with 511 additions and 324 deletions
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9
src/submissions/backend/db/models/submissions.py
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@@ -426,9 +426,10 @@ class BasicSubmission(BaseClass):
dicto = self.to_dict(full_data=True, backup=backup)
new_dict = {}
for key, value in dicto.items():
missing = value is None or value == ""
match key:
case "reagents":
new_dict[key] = [PydReagent(**reagent) for reagent in value]
new_dict[key] = [PydReagent(**reagent, missing=False) for reagent in value]
case "samples":
# samples = {k.lower().replace(" ", "_"):v for k,v in dicto['samples'].items()}
new_dict[key] = [PydSample(**{k.lower().replace(" ", "_"):v for k,v in sample.items()}) for sample in dicto['samples']]
@@ -438,12 +439,12 @@ class BasicSubmission(BaseClass):
except TypeError as e:
logger.error(f"Possible no equipment error: {e}")
case "Plate Number":
new_dict['rsl_plate_num'] = dict(value=value, missing=True)
new_dict['rsl_plate_num'] = dict(value=value, missing=missing)
case "Submitter Plate Number":
new_dict['submitter_plate_num'] = dict(value=value, missing=True)
new_dict['submitter_plate_num'] = dict(value=value, missing=missing)
case _:
logger.debug(f"Setting dict {key} to {value}")
new_dict[key.lower().replace(" ", "_")] = dict(value=value, missing=True)
new_dict[key.lower().replace(" ", "_")] = dict(value=value, missing=missing)
new_dict['filepath'] = Path(tempfile.TemporaryFile().name)
return PydSubmission(**new_dict)